## Papers (2011-)

- Bing Wang, Lang Cao, Hideyuki Suzuki, and Kazuyuki Aihara: "Epidemic Spread in Adaptive Networks with Multitype Agents," Journal of Physics A: Mathematical and Theoretical, Vol.44, No.3, 035101 (2011).
- Hiroyasu Ando, Sudeshna Sinha, Remo Storni, and Kazuyuki Aihara: "Synthetic Gene Networks as Potential Flexible Parallel Logic Gates," Europhysics Letters, Vol.93, No.5, 50001-p1-p6 (2011).
- Lang Cao, Hisashi Ohtsuki, Bing Wang and Kazuyuki Aihara: "Evolution of Cooperation on Adaptively Weighted Networks," Journal of Theoretical Biology, Vol.272, No.1, pp.8-15 (2011).
- Yoshito Hirata, Yuko Shimo, Hiroshi L. Tanaka, and Kazuyuki Aihara: "Chaotic Properties of the Arctic Oscillation Index," Scientific Online Letters on the Atmosphere (SOLA), Vol.7, pp.33-36 (2011).
- Ikkyu Aihara, Ryu Takeda, Takeshi Mizumoto, Takuma Otsuka, Toru Takahashi, Hiroshi G. Okuno, and Kazuyuki Aihara: "Complex and Transitive Synchronization in a Frustrated System of Calling Frogs," Physical Review E, Vol.83, 031913 (2011).
- Yoshito Hirata and Kazuyuki Aihara: "Statistical Tests for Serial Dependence and Laminarity on Recurrence Plots," International Journal of Bifurcation and Chaos, Vol.21, No.4, pp.1077-1084 (2011).
- Yang Chen and Kazuyuki Aihara: "Some Convex Functions Based Measures of Independence and Their Application to Strange Attractor Reconstruction," Entropy, Vol.13, No.4, pp.820-840 (2011).
- Yoshiyuki Sato and Kazuyuki Aihara: "A Bayesian Model of Sensory Adaptation," PLoS ONE, Vol.6, No.4, e19377 (2011).
- Zhijie Wang, Hong Fan, and Kazuyuki Aihara: "Three Synaptic Components Contributing to Robust Network Synchronization," Physical Review E, Vol.83, No.5, 051905 (2011).
- Kai Morino, Gouhei Tanaka, and Kazuyuki Aihara: "Robustness of multilayer oscillator networks," Physical Review E, Vol.83, No.5, 056208 (2011).
- C. Cheong Took, G. Strbac, K. Aihara, D.P. Mandic: "Quaternion-valued Short-term Joint Forecasting of Three-dimensional Wind and Atmospheric Parameters," Renewable Energy, Vol.36, No.6, pp.1754-1760 (2011).
- Kunichika Tsumoto, Gen Kurosawa, Tetsuya Yoshinaga, and Kazuyuki Aihara: "Modeling Light Adaptation in Circadian Clock: Prediction of the Response That Stabilizes Entrainment," PLoS ONE, Vol.6, No.6, e20880 (2011).
- Takeshi Mizumoto, Ikkyu Aihara, Takuma Otsuka, Ryu Takeda, Kazuyuki Aihara, and Hiroshi G. Okuno: "Sound Imaging of Nocturnal Animal Calls in their Natural Habitat," Journal of Comparative Physiology A, Vol.197, No.9, pp.915-921 (2011).
- Tsuyoshi Okamoto, Koji Ikezoe, Hiroshi Tamura, Masataka Watanabe, Kazuyuki Aihara, and Ichiro Fujita: "Predicted Contextual Modulation Varies with Distance from Pinwheel Centers in the Orientation Preference Map," Scientific Reports, Vol.1, No.114, pp.1-11 (2011).
- Graziano Chesi, Luonan Chen, and Kazuyuki Aihara: "On the robust stability of time-varying uncertain genetic regulatory networks," International Journal of Robust and Nonlinear Control, Vol.21, pp.1778-1790 (2011).
- Lang Cao, Xun Li, Bing Wang, and Kazuyuki Aihara: "Rendezvous Effects in the Diffusion Process on Bipartite Metapopulation Networks," Physical Review E, Vol.84, No.4, 041936 (2011).
- Yuichi Katori, Kazuhiro Sakamoto, Naohiro Saito, Jun Tanji, Hajime Mushiake, Kazuyuki Aihara: "Representational Switching by Dynamical Reorganization of Attractor Structure in a Network Model of the Prefrontal Cortex," PLoS Computational Biology, Vol.7, No.11, e1002266, pp.1-17 (2011).
- Hiroaki Kuramae, Yoshito Hirata, Nicholas Bruchovsky, Kazuyuki Aihara, and Hideyuki Suzuki: "Nonlinear Systems Identification by Combining Regression with Bootstrap Resampling," Chaos, Vol.21, No.4, 043121-1-12 (2011).
- Shinji Nakaoka and Kazuyuki Aihara: "Mathematical Study on Kinetics of Hematopoietic Stem Cells --Theoretical Conditions for Successful Transplantation," Journal of Biological Dynamics, Vol.6, No.2, pp.836-854 (2012).
- Yang Li, Ping Zhu, Xiaoping Xie, Guoguang He, and Kazuyuki Aihara: "Learning-induced Pattern Classification in a Chaotic Neural Network," Physics Letters A, Vol.376, pp.412-417 (2012).
- Gouhei Tanaka, Kai Morino, and Kazuyuki Aihara: "Dynamical Robustness in Complex Networks: The Crucial Role of Low-degree Nodes," Scientific Reports, Vol.2, No.232, pp.1-6 (2012).
- Yoshito Hirata and Kazuyuki Aihara: "Timing Matters in Foreign Exchange Markets," Physica A, Vol.391, No.3, pp.760-766 (2012).
- Remo Storni, Hiroyasu Ando, Kazuyuki Aihara, K. Murali, and Sudeshna Sinha: "Manipulating Potential Wells in Logical Stochastic Resonance to Obtain XOR Logic," Physics Letters A, Vol.376, No.8-9, pp.930-937 (2012).
- Yoshito Hirata, Gouhei Tanaka, Nicholas Bruchovsky and Kazuyuki Aihara: "Mathematically Modelling and Controlling Prostate Cancer under Intermittent Hormone Therapy," Asian Journal of Andrology, Vol.14, pp.270--277 (2012).
- L. Chen, R Liu, Z.-P. Liu, M. Li, and K. Aihara: “Detecting Early-warning Signals for Sudden Deterioration of Complex Diseases by Dynamical Network Biomarkers,” Scientific Reports, Vol.2, No.342, pp.1-8 (2012).
- Isao Nishikawa, Gouhei Tanaka, Takehiko Horita, and Kazuyuki Aihara: "Long-term Fluctuations in Globally Coupled Phase Oscillators with General Coupling: Finite Size Effects," Chaos, Vol.22, No.1, 013133-1-10 (2012).
- Keisuke Ejima, Ryosuke Omori, Kazuyuki Aihara, and Hiroshi Nishiura: "Real-time Investigation of Measles Epidemics with Estimate of Vaccine Efficacy," International Journal of Biological Sciences, Vol.8, No.5, pp.620-629 (2012).
- Takashi Kanamaru and Kazuyuki Aihara: "Rewiring-Induced Chaos in Pulse-Coupled Neural Networks," Neural Computation, Vol.24, No.4, pp.1020-1046 (2012).
- Takahito Mitsui, Seiji Uenohara, Takashi Morie, and Kazuyuki Aihara: "Torus-doubling Process via Strange Nonchaotic Attractors," Physics Letters A, Vol.376, No.24-25, pp.1907-1914(2012).
- Koji Iwayama, Yoshito Hirata, Kohske Takahashi, Katsumi Watanabe, Kazuyuki Aihara, and Hideyuki Suzuki: "Characterizing Global Evolutions of Complex Systems via Intermediate Network Representations," Scientific Reports, Vol.2, Article No.423, pp.1-5 (2012).
- Yoshito Hirata, Koichiro Akakura, Celestia S. Higano, Nicholas Bruchovsky, and Kazuyuki Aihara: "Quantitative Mathematical Modeling of PSA Dynamics of Prostate Cancer Patients Treated with Intermittent Androgen Suppression," Journal of Molecular Cell Biology, Vol.4, No.3, pp.127-132 (2012).
- Yoshito Hirata and Kazuyuki Aihara:"Describing High-dimensional Dynamics with Low-dimensional Piecewise Affine Models: Applications to Renewable Energy," Chaos, Vol.22, No.2, 023143-1-6 (2012).
- Makito Oku and Kazuyuki Aihara: "Numerical Analysis of Transient and Periodic Dynamics in Single and Coupled Nagumo-Sato Models," International Journal of Bifurcation and Chaos, Vol.22, No.6, 1230021-1-15 (2012).
- Munehisa Sekikawa, Naohiko Inaba, Takashi Tsubouchi, and Kazuyuki Aihara: "Novel Bifurcation Structure Generated in Piecewise-linear Three-LC Resonant Circuit and its Lyapunov Analysis," Physica D, Vol.241, No.14, pp.1169-1178 (2012).
- Masanori Ikeda, Yoshihiko Horio, Kazuyuki Aihara: "Improved Dynamical Logic Element with Chaotic State Transitions Using Switched-Capacitor Chaotic Neuron Circuit," Journal of Signal Processing, Vol.16, No.4, pp.291-294 (2012).
- Bing Wang, Lang Cao, Hideyuki Suzuki, and Kazuyuki Aihara: "Impacts of Clustering on Interacting Epidemics," Journal of Theoretical Biology, Vol.304, pp.121-130 (2012).
- Hiroyasu Ando, Hiromichi Suetani, Jürgen Kurths, and Kazuyuki Aihara: "Chaotic Phase Synchronization in Bursting-neuron Models Driven by a Weak Periodic Force," Physical Review E, Vol.86, No.1, 016205-1-11 (2012).
- Keisuke Ejima, Ryosuke Omori, Benjamin J. Cowling, Kazuyuki Aihara, and Hiroshi Nishiura: "The Time Required to Estimate the Case Fatality Ratio of Influenza Using Only the Tip of an Iceberg: Joint Estimation of the Virulence and the Transmission Potential," Computational and Mathematical Methods in Medicine, Vol.2012, 978901-1-10 (2012).
- Tohru Kohda, Yoshihiko Horio, Yoichiro Takahashi, and Kazuyuki Aihara: "Beta Encoders: Symbolic Dynamics and Electronic Implementation," International Journal of Bifurcation and Chaos, Vol.22, No.9, 1230031-1-55 (2012).
- Teerasit Termsaithong, Makito Oku, and Kazuyuki Aihara: "Dynamical Coherence Patterns in Neural Field Model at Criticality," Artificial Life and Robotics, Vol.17, No.1, pp.75-79 (2012).
- Ryo Yokota, Kazuyuki Aihara, R. Kanzaki, and H. Takahashi: "Tonotopic-column-dependent Variability of Neural Encoding in the Auditory Cortex of Rats," Neuroscience, Vol.223, pp.377-387 (2012).
- Hiroyuki Asahara, Kenichi Tasaki, Kazuyuki Aihara, and Takuji Kousaka: "The Stabilizing Mechanism for an Interrupted Dynamical System with Periodic Threshold," Nonlinear Theory and Its Applications, IEICE Vol.3, No.4, pp.546-556 (2012).
- Yuichi Katori, Yasuhiko Igarashi, Masato Okada, and Kazuyuki Aihara: "Stability Analysis of Stochastic Neural Network with Depression and Facilitation Synapses," Journal of the Physical Society of Japan, Vol.81, pp.114007-1-7 (2012).
- Kiyohito Nagano and Kazuyuki Aihara: "Equivalence of Convex Minimization Problems Over Base Polytopes," Japan Journal of Industrial and Applied Mathematics (JJIAM), Vol.29, No.3, pp.519-534 (2012).
- Ken-ichi Sawai, Yoshiyuki Sato, and Kazuyuki Aihara: "Auditory Time-interval Perception as Causal Inference on Sound Sources," Frontiers in Perception Science, Vol.3, Article No.524, pp.1-8 (2012).
- Bing Wang, Lang Cao, Hideyuki Suzuki, and Kazuyuki Aihara: "Safety-information-driven Human Mobility Patterns with Metapopulation Epidemic Dynamics," Scientific Reports, Vol.2, Article No.887, pp.1-8 (2012).
- Rui Liu, Meiyi Li, Zhi-Ping Liu, Jiarui Wu, Luonan Chen, and Kazuyuki Aihara: "Identifying Critical Transitions and their Leading Biomolecular Networks in Complex Diseases," Scientific Reports, Vol.2, Article No.813, pp.1-9 (2012).
- Timothee Leleu and Kazuyuki Aihara: "Combined Effects of LTP/LTD and Synaptic Scaling in Formation of Discrete and Line Attractors with Persistent Activity from Non-trivial Baseline," Cognitive Neurodynamics, Vol.6, No.6, pp.499-524 (2012).
- Tohru Kohda, Yoshihiko Horio, and Kazuyuki Aihara: "β-expansion Attractors Observed in A/D Converters," AIP Chaos, Vol.22, No.4, 047512-1-18 (2012).
- Yoshito Hirata, Makito Oku, and Kazuyuki Aihara: "Chaos in Neurons and its Application: Perspective of Chaos Engineering," AIP Chaos, Vol.22, No.4, 047511-1-7 (2012).
- G. Tanaka and K. Aihara: "Effects of Seasonal Variation Patterns on Recurrent Outbreaks in Epidemic Models," Journal of Theoretical Biology, Vol.317, pp.87-95 (2013).
- T. Kanamaru, H. Fujii, and K. Aihara: "Deformation of Attractor Landscape via Cholinergic Presynaptic Modulations: A Computational Study Using a Phase Neuron Model," PLOS ONE, Vol.8, No.1, e53854, pp.1-14 (2013).
- H. Suzuki, J. Imura, and K. Aihara: "Chaotic Ising-like Dynamics in Traffic Signals," Scientific Reports, Vol.3, Article No.1127, pp.1-6 (2013).
- K. Fujimoto, M. Kobayashi, T. Yoshinaga, and K. Aihara: "Identification of Target Image Regions Based on Bifurcations of a Fixed Point in a Discrete-Time Oscillator Network," International Journal of Innovative Computing, Information and Control, Vol.9, No.1, pp.355-363 (2013).
- M. Fukuhara, S. Iwami, K. Sato, Y. Nishimura, H. Shimizu, K. Aihara and Y. Koyanagi: “Quantification of the Dynamics of Enterovirus 71 Infection by Experimental-mathematical Investigation,” Journal of Virology, Vol.87, No.1, pp.701-705 (2013).
- H. San, T. Kato, T. Maruyama, K. Aihara, and M. Hotta: "Non-Binary Pipeline Analog-to-digital Converter Based on β-Expansion," IEICE Transactions on Fundamentals of Electronics, Communications and Computer Sciences, Vol.E96-A, No.2, pp.415-421 (2013).
- Y. Katori, Y. Otsubo, M. Okada, and K. Aihara: "Stability Analysis of Associative Memory Network Composed of Stochastic Neurons and Dynamic Synapses," Frontiers in Computational Neuroscience, Vol.7, Article 6 (2013).
- S. Nakaoka and K. Aihara: "Stochastic Simulation of Structured Skin Cell Population Dynamics," Journal of Mathematical Biology, Vol.66, No.4-5, pp.807-835 (2013).
- K. Ejima, K. Aihara, and H. Nishiura: “Modeling the Obesity Epidemic: Social Contagion and its Implications for Control,” Theoretical Biology and Medical Modelling Vol.10, Article No.17, pp.1-13 (2013).
- B. Zhang, L. Chen, and K. Aihara: "Incremental Stability Analysis of Stochastic Hybrid Systems," Nonlinear Analysis: Real World Applications, Vol.14, No.2, pp.1225-1234 (2013).
- R. Fujie, K. Aihara, and N. Masuda: "A Model of Competition among More Than Two Languages," Journal of Statistical Physics, Vol.151, pp.289-303 (2013).
- K. Iwayama, Y. Hirata, H. Suzuki, and K. Aihara: “Change-point Detection with Recurrence Networks,” Nonlinear Theory and Its Applications, IEICE, Vol.4, No.2, pp.160-171 (2013).
- R. Suzuki, T. Maruyama, H. San, K. Aihara, and M. Hotta: “Robust Cyclic-ADC Architecture Based on β-Expansion,” IEICE Transactions on Electronics, Vol.E96-C, No.4, pp.553-559 (2013).
- H. Suzuki, J. Imura, Y. Horio, and K. Aihara: “Chaotic Boltzmann Machines,” Scientific Reports, Vol.3, Article No.1610, pp.1-5 (2013).
- K. Ejima, K. Aihara, and H. Nishiura: “The Impact of Model Building on the Transmission Dynamics under Vaccination: Observable (Symptom-Based) versus Unobservable (Contagiousness-Dependent) Approaches,” PLOS ONE, Vol.8, No.4, e62062, pp.1-10 (2013).
- K. Sasahara, Y. Hirata, M. Toyoda, M. Kitsuregawa, and K. Aihara: “Quantifying Collective Attention from Tweet Stream,” PLOS ONE, Vol.8, No.4, e61823, pp.1-10 (2013).
- T. Mitsui and K. Aihara: "Dynamics between Order and Chaos in Conceptual Models of Glacial Cycles," Climate Dynamics, Vol.42, No.11-12, pp.3087-3099 (2013).
- Kazuyuki Aihara, Kazufumi Ito, Junichi Nakagawa, and Tomoya Takeuchi: "Optimal Control Laws for Traffic Flow," Applied Mathematics Letters, Vol.26, pp.617-623 (2013).
- S. Uenohara, T. Mitsui, Y. Hirata, T. Morie, Y. Horio, and K. Aihara: "Experimental Distinction between Chaotic and Strange Nonchaotic Attractors on the Basis of Consistency," Chaos, Vol.23, No.2, pp.023110-1-9 (2013).
- R. Liu, K. Aihara, and L. Chen: “Dynamical Network Biomarkers for Identifying Critical Transitions of Biological Processes,” Quantitative Biology, Vol.1, No.2, pp.105-114 (2013).
- Y. Hirata and K. Aihara: "Estimating Optimal Partitions for Stochastic Complex Systems," European Physical Journal Special Topics, Vol.222, No.2, pp.303-315 (2013).
- T. Kohno and K. Aihara: "Improving Noise Resistance of Intrinsic Rhythms in a Square-wave Burster Model," Biosystems, Vol.112, No.3, pp.276-283 (2013).
- T. Suzuki and K. Aihara: “Nonlinear System Identification for Prostate Cancer and Optimality of Intermittent Androgen Suppression Therapy,” Mathematical Biosciences, Doi: 10.1016/j.mbs.2013.04.007 (2013).
- Y. Li, P. Zhu, X. Xie, H. Chen, K. Aihara, and G. He: “Controlling a Chaotic Neural Network for Information Processing,” Neurocomputing, Vol.110, pp.111-120 (2013).
- K. Ejima, K. Aihara, and H. Nishiura: “On the Use of Chance-adjusted Agreement Statistic to Measure the Assortative Transmission of Infectious Diseases,” Computational and Applied Mathematics, Vol.32, No.2, pp.303-313 (2013).
- T. Omi, Y. Ogata, Y. Hirata, and K. Aihara: “Forecasting Large Aftershocks within One Day after the Main Shock,” Scientific Reports, Vol.3, Article No.2218, pp.1-7 (2013).
- B. Wang, H. Suzuki, and K. Aihara: “Evaluating Roles of Nodes in Optimal Allocation of Vaccines with Economic Considerations,” PLOS ONE, Vol.8, No.8, e70793-1-9 (2013).
- M.A. Dahlem, S. Rode, A. May, N. Fujiwara, Y. Hirata, K. Aihara, and J. Kurths: “Towards Dynamical Network Biomarkers in Neuromodulation of Episodic Migraine,” Translational Neuroscience, Vol.4, No.3, pp.282-294 (2013).
- I. Nishikawa, G. Tanaka, and K. Aihara: “Nonstandard Scaling Law of Fluctuations in Finite-size Systems of Globally Coupled Oscillators,” Physical Review E, Vol.88, No.2, 024102-1-5 (2013).
- K. Morino, G. Tanaka, and K. Aihara: "Efficient Recovery of Dynamic Behavior in Coupled Oscillator Networks," Physical Review E, Vol.88, No.3, 032909 (2013).
- M. Inoue, J. Imura, K. Kashima, and K. Aihara: "Robust Bifurcation Analysis of Systems with Dynamic Uncertainties," International Journal of Bifurcation and Chaos, Vol.23, 1350157 (2013).
- M. Onizuka, H. Hoang, M. Kawato, I. T. Tokuda, N. Schweighofer, Y. Katori, K. Aihara, E. J. Lang, and K. Toyama: "Solution to the Inverse Problem of Estimating Gap-junctional and Inhibitory Conductance in Inferior Olive Neurons from Spike Trains by Network Model Simulation," Neural Networks, Vol.47, pp.51-63 (2013).
- M. Suzuki, J. Imura, and K. Aihara: "Analysis and Stabilization for Networked Linear Hyperbolic Systems of Rationally Dependent Conservation Laws," Automatica, Vol.49, No.11, pp.3210-3221 (2013).
- M. Oku, T. Makino, and K. Aihara: "Pseudo-orthogonalization of Memory Patterns for Associative Memory," IEEE Transactions on Neural Networks and Learning Systems, Vol.24, No.11, pp.1877-1887 (2013).
- T. Ishizaki, K. Kashima, J. Imura, A. Katoh, H. Morita, and K. Aihara: "Distributed Parameter Modelling and Finite-Frequency Loop-Shaping of Electromagnetic Molding Machine," Control Engineering Practice, Vol.21, No.12, pp.1735-1743 (2013).
- E.P. Bravo, K. Aihara, and Y. Hirata: "Application of Joint Permutations for Predicting Coupled Time Series," Chaos, Vol.23, No.4 043104 (2013).
- T. Leleu and K. Aihara: "Spontaneous Slow Oscillations and Sequential Patterns due to Short-term Plasticity in a Model of the Cortex," Neural Computation, Vol.25, No.12, pp.1-52 (2013).
- Q. Guo, Z. Lu, Y. Hirata, and K. Aihara: "Parameter Estimation and Optimal Scheduling Algorithm for a Mathematical Model of Intermittent Androgen Suppression Therapy for Prostate Cancer," Chaos, Vol.23, No.4, 043125 (2013).
- K. Sakamoto, Y. Katori, N. Saito, S. Yoshida, K. Aihara, and H. Mushiake: “Increased Firing Irregularity as an Emergent Property of Neural-State Transition in Monkey Prefrontal Cortex,” PLOS ONE, Vol.8, No.12, e80906-1-26 (2013).
- K. Sato, N. Misawa, S. Iwami, Y. Satou, M. Matsuoka, Y. Ishizaka, M. Ito, K. Aihara, D.S. An, and Y. Koyanagi: “HIV-1 Vpr Accelerates Viral Replication during Acute Infection by Exploitation of Proliferating CD4+ T Cells In Vivo,” PLOS PATHOGENS, Vol.9, No.12, e1003812-1-12 (2013).
- M. Suzuki, K. Katsuki, J. Imura, J. Nakagawa, T. Kurokawa, and K. Aihara: “Simultaneous Optimization of Slab Permutation Scheduling and Heat Controlling for a Reheating Furnace,” Journal of Process Control, Vol.24, pp.225-238 (2014).
- M.A.S. Kamal, J. Imura, A. Ohata, T. Hayakawa, and K. Aihara: "Smart Driving of a Vehicle in Congested Traffic," IEEE Trans. on Intelligent Transportation Systems, Vol.15. No.2, pp.878-888 (2014)
- I. Aihara, T. Mizumoto, T. Otsuka, H. Awano, K. Nagira, H.G. Okuno, and K. Aihara: "Spatio-Temporal Dynamics in Collective Frog Choruses Examined by Mathematical Modeling and Field Observations," Scientific Reports, Vol.4, Article No.3891, pp.1-8 (2014).
- I. Nishikawa, K. Iwayama, G. Tanaka, T. Horita, and K. Aihara: “Finite-size Scaling in Globally Coupled Phase Oscillators with a General Coupling Scheme,” Progress of Theoretical and Experimental Physics, Vol.2014, No.2, 023A07-1-11, DOI: 10.1093/ptep/ptu015 (2014).
- J.P. Ramirez, K. Aihara, R.H.B. Fey, and H. Nijmeijer: "Further Understanding of Huygens' Coupled Clocks: The Effect of Stiffness," Physica D, Vol.270, pp.11-19 (2014).
- T. Ishizaki, K. Kashima, J. Imura, and K. Aihara: "Model Reduction and Clusterization of Large-Scale Bidirectional Networks," IEEE Transactions on Automatic Control, Vol.59, No.1, pp.48-63 (2014).
- T. Omi, Y. Ogata, Y. Hirata, and K. Aihara: “Estimating the ETAS Model from an Early Aftershock Sequence,” Geophysical Research Letters, Vol.41, No.3, pp.850-857 (2014).
- K. Ejima, K. Aihara, and H. Nishiura: “Probabilistic Differential Diagnosis of Middle East Respiratory Syndrome (MERS) using the Time from Immigration to Illness Onset among Imported Cases,” Journal of Theoretical Biology, Vol.346, pp.47-53 (2014).
- F. Duan, K. Watanabe, Y. Yoshimura, M. Kikuchi, Y. Minabe, and K. Aihara: “Relationship between Brain Network Pattern and Cognitive Performance of Children Revealed by MEG Signals during Free Viewing of Video,” Brain and Cognition, Vol.86, pp.10-16 (2014).
- K. Aihara and M. Hasegawa: “Optimization, Chaotic Neural Networks, and Coherent Ising Machines [Further Thoughts],” Proceedings of the IEEE, Vol.102, No.4, p.585 (2014).
- M. Hasegawa, H. Hirai, K. Nagano, H. Harada, and K. Aihara: “Optimization for Centralized and Decentralized Cognitive Radio Networks,” Proceedings of the IEEE, Vol.102, No.4, pp.574-584 (2014).
- M. Sekikawa, N. Inaba, K. Kamiyama, and K. Aihara: "Three-dimensional Tori and Arnold Tongues," Chaos, Vol.24, No.1, 013137 (2014).
- R. Sugawara, H. San, K. Aihara, and M. Hotta: “Experimental Implementation of Non-binary Cyclic ADCs with Radix-value Estimation Algorithm,” IEICE Trans on Electronics, Vol.E97-C, No.4, pp.308-315 (2014).
- A. Sharma, M.D. Shrimali, and K. Aihara: "Effect of Mixed Coupling on Relay-coupled R\"ossler and Lorenz Oscillators," Physical Review E, Vol.90, No.6, 062907, pp.1-6 (2014).
- M.A.S. Kamal, J. Imura, T. Hayakawa, A. Ohata, and K. Aihara: "A Vehicle-Intersection Coordination Scheme for Smooth Flows of Traffic without Using Traffic Lights," IEEE Transactions on Intelligent Transportation Systems, Vol.16, No.3, pp.1136-1147 (2015).
- R. Liu, X. Wang, K. Aihara, and L. Chen: "Early Diagnosis of Complex Diseases by Molecular Biomarkers, Network Biomarkers, and Dynamical Network Biomarkers,” Medicinal Research Reviews, Vol.34, No.3, pp.455-478 (2014).
- G. Tanaka, K. Morino, H. Daido, K. Aihara: “Dynamical Robustness of Coupled Heterogeneous Oscillators,” Physical Review E, Vol. 89, 052906-1-8 (2014).
- H. Ikeda, R.J. de Boer, K. Sato, S. Morita, N. Misawa, Y. Koyanagi, K. Aihara, and S. Iwami: “Improving the Estimation of the Death Rate of Infected Cells from Time Course Data during the Acute Phase of Virus Infections: Application to Acute HIV-1 Infection in a Humanized Mouse Model,” Theoretical Biology and Medical Modelling, Vol.11, Article No.22, pp.1-14 (2014).
- Y. Hirata, S. Azuma, and K. Aihara: “Model Predictive Control for Optimally Scheduling Intermittent Androgen Suppression of Prostate Cancer,” Methods, Vol.67, No.3, pp.278-281 (2014).
- R. Liu, X. Yu , X. Liu, D. Xu, K. Aihara, and L. Chen: “Identifying Critical Transitions of Complex Diseases based on a Single Sample,” Bioinformatics, Vol.30, No.11, pp.1579-1586 (2014).
- Y. Suzuki, D. Sakai, T. Nomura, Y. Hirata, and K. Aihara: “A New Protocol for Intermittent Androgen Suppression Therapy of Prostate Cancer with Unstable Saddle-point Dynamics,” Journal of Theoretical Biology, Vol.350, pp.1-16 (2014).
- Y. Hirata, T. Yamada, J. Takahashi, K. Aihara, and H. Suzuki: "Online multi-step prediction for wind speeds and solar irradiation: evaluation of prediction errors," Renewable Energy, Vol.67, pp.35-39 (2014).
- S. Oya, K. Aihara, and Y. Hirata: “An Absolute Measure for a Key Currency,” Physica A, Vol.407, pp.15-23 (2014).
- T. Kobayashi, Y. Koizumi, J.S. Takeuchi, N. Misawa, Y. Kimura, S. Morita, K. Aihara, Y. Koyanagi, S. Iwami, and K. Sato: "Quantification of Deaminase Activity-dependent and -independent Restriction of HIV-1 Replication Mediated by APOBEC3F and APOBEC3G through Experimental-mathematical Investigation," Journal of Virogy, Vol.88, No.10, pp.5881-5587 (2014).
- T. Kohno and K. Aihara: "Silicon Neuronal Networks towards Brain-morphic Computers," IEICE NOLTA Journal, Vol.5, No.3, pp.379--390 (2014).
- G. Tanaka, C. Urabe, and K. Aihara: "Random and Targeted Interventions for Epidemic Control in Metapopulation Models," Scientific Reports, Vol.4, Article No.5522, pp.1-8 (2014).
- B. Liu, Z. Yuan, K. Aihara, and L. Chen: "Reinitiation Enhances Reliable Transcriptional Responses in Eukaryotes," Journal of the Royal Society Interface, Vol.11, No.97, 20140326 (2014).
- B. Wang, G. Tanaka, H. Suzuki, and K. Aihara: "Epidemic Spread on Interconnected Metapopulation Networks," Physical Review E, Vol.90, 032806-1-12 (2014).
- M.A.S. Kamal, J. Imura, A. Ohata, T. Hayakawa, and K. Aihara: "Network-wide Optimization of Traffic Signals Using Mixed Integer Programming, Journal of Robotics and Mechatronics, Vol.26, No.5, pp.607-615 (2014).
- Y. Hirata, K. Aihara, and H. Suzuki: "Predicting Multivariate Time Series in Real Time with Confidence Intervals: Applications to Renewable Energy," The European Physics Journal Special Topics, Vol.223, No.12, pp.2451-2460 (2014).
- D. Ito, T. Ueta, J. Imura, and K. Aihara: "Controlling Chaos of Hybrid Systems by Variable Threshold Values," International Journal of Bifurcation and Chaos, Vol.24, No.10, 1450125-1-12 (2014).
- Y. Tao, Q. Guo, and K. Aihara: “A Partial Differential Equation Model and its Reduction to an Ordinary Differential Equation Model for Prostate Tumor Growth under Intermittent Hormone Therapy,” Journal of Mathematical Biology, Vol.69, pp.817-838 (2014).
- M. Nagata, N. Fujiwara, G. Tanaka, H. Suzuki, E. Kohda, and K. Aihara: "Node-wise Robustness against Fluctuations of Power Consumption in Power Grids," European Physical Journal Special Topic, Vol.223, No.12, pp.2549-2559 (2014).
- Y.D. Sato and K. Aihara: "Changes of Firing Rate Induced by Changes of Phase Response Curve in Bifurcation Transitions," Neural Computation, Vol.26, No.11, pp.2395--2418 (2014).
- S. Oya, K. Aihara, and Y. Hirata: "Forecasting Abrupt Changes in Foreign Exchange Markets: Method using Dynamical Network Marker," New Journal of Physics, Vol.16, 115015 (2014).
- H. Ma, K. Aihara, and L. Chen: "Detecting Causality from Nonlinear Dynamics with Short-term Time Series," Scientific Reports, Vol.4, Article No.7464, pp.1-10 (2014).
- J. Pena Ramirez, R.H.B. Fey, K. Aihara, H. Nijmeijer: "An Improved Model for the Classical Huygens' Experiment on Synchronization of Pendulum Clocks," Journal of Sound and Vibration, Vol.333, No.26, pp.7248-7266 (2014).
- H. Ma, T. Zhou, K. Aihara, and L. Chen: "Predicting Time Series from Short-term High-Dimensional Data," International Journal of Bifurcation and Chaos, Vol.24, No.12, 1430033-1-19 (2014--12).
- K. Kamiyama, M. Komuro, T. Endo, and K. Aihara: "Classification of Bifurcations of Quasi-periodic Solutions using Lyapunov Bundles," International Journal of Bifurcation and Chaos, Vol.24, No.12, 1430034-1-30 (2014).
- K. Aihara and Y. Hirata: "FOREWORD: Special Section on Complex Systems Modelling and its Transdisciplinary Applications," Nonlinear Theory and Its Applications, IEICE, Vol.6, No.1, p.1 (2015).
- K. Fujimoto and K. Aihara: "Bifurcation Avoidance Control of Stable Periodic Points using the Maximum Local Lyapunov Exponent," Nonlinear Theory and Its Applications, IEICE, Vol.6, No.1, pp.2-14 (2015).
- K. Fujiwara, H. Suzuki, T. Ikeguchi, and K. Aihara: "Method for Analyzing Time-varying Statistics on Point Process Data with Multiple Trials," Nonlinear Theory and Its Applications, IEICE, Vol.6, No.1, pp.38-46 (2015).
- T. Makino, Y. Iwata, K. Shinohara, Y. Jitsumatsu, M. Hotta, H. San, and K. Aihara: "Rigorous Estimates of Quantization Error for A/D Converters based on Beta-map," Nonlinear Theory and Its Applications, IEICE, Vol.6, No.1, pp.99-111 (2015).
- L. Speidel, R. Lambiotte, K. Aihara, and N. Masuda: "Steady State and Mean Recurrence Time for Random Walks on Stochastic Temporal Networks, Physical Review E, Vol.91, No.1, 012806-1-12 (2015).
- S. Nakano, Y. Hirata, K. Iwayama, and K. Aihara: "Intra-day Response of Foreign Exchange Markets After the Tohoku-Oki Earthquake," Physica A, Vol.419, pp.203-214 (2015).
- Y. Hirata, M. Shiro, N. Takahashi, K. Aihara, H. Suzuki, and P. Mas: "Approximating High-dimensional Dynamics by Barycentric Coordinates with Linear Programming," Chaos, Vol.25, 013114-1-15 (2015).
- T. Hatano, Y. Hirata, H. Suzuki, and K. Aihara: "Comparison between Mathematical Models of Intermittent Androgen Suppression for Prostate Cancer," Journal of Theoretical Biology, Vol.366, pp.33-45 (2015).
- H. Tsukada, H. Fujii, K. Aihara, and I. Tsuda: "Computational Model of Visual Hallucination in Dementia with Lewy Bodies," Neural Networks, Vol.62, pp.73-82 (2015).
- R. Hosaka, T. Nakajima, K. Aihara, Y. Yamaguchi, and H. Mushiake: "Arm-use Dependent Lateralization of Gamma and Beta Oscillations in Primate Medial Motor Areas," Neural Networks, Vol.62, pp.62--66 (2015).
- G. Cao, L. Chen, and K. Aihara: "Power System Voltage Stability Assessment based on Branch Active Powers," IEEE Transactions on Power Systems, Vol.20, No.2, pp.989-996 (2015).
- T. Leleu and K. Aihara: "Unambiguous Reconstruction of Network Structure using Avalanche Dynamics," Physical Review E, Vol.91, No.2, 022804, pp.1-12 (2015).
- H. Kitajima, T. Yoshinaga, J. Imura, and K. Aihara: "Robust Bifurcation Analysis based on Optimization of Degree of Stability," International Journal of Innovative Computing, Information and Control, Vol.11, No.1, pp.153-162 (2015).
- Y. Sughiyama, T.J. Kobayashi, K. Tsumura, and K. Aihara: "Pathwise Thermodynamic Structure in Population Dynamics," Physical Review E, Vol.91, 032120 (2015).
- M.K. Kajita, R. Yokota, K. Aihara, T.J. Kobayashi: "Experimental and Theoretical Bases for Mechanisms of Antigen Discrimination by T Cells," Biophysics, Vol.11, pp.85-92 (2015).
- T. Ishizaki, H. Sandberg, K. Kashima, J. Imura, K. Aihara: "Dissipativity-Preserving Model Reduction for Large-Scale Distributed Control Systems," IEEE Transactions on Automatic Control, Vol.60, No.4, pp.1023-1037 (2015).
- T. Sasai, K. Morino, G. Tanaka, J.A. Almendral, and K. Aihara: "Robustness of Oscillatory Behavior in Correlated Networks," PLOS ONE, Vol.10, No.4, e0123722, pp.1-21 (2015).
- T. Omi, Y. Ogata, Y. Hirata, and K. Aihara: "Intermediate-term Forecasting of Aftershocks from an Early Aftershock Sequence: Bayesian and Ensemble Forecasting Approaches," Journal of Geophysical Research Solid Earth, Vol.120, No.4, pp.2561-2578 (2015).
- R. Yokota, K. Aihara, R. Kanzaki, and H. Takahashi: "Learning-Stage-Dependent Plasticity of Temporal Coherence in the Auditory Cortex of Rats," Brain Topography, Vol.28, No.3, pp.401-410 (2015).
- D. Tanaka, H. Asahara, K. Aihara, and T. Kousaka: "Basic Properties of Two-Dimensional Composite Dynamical System with Spike Noise," Electronics and Communications in Japan, Vol.98, No.6, pp.26-35 (2015).
- K. Morino, Y. Hirata, R. Tomioka, H. Kashima, K. Yamanishi, N. Hayashi, S. Egawa, and K. Aihara: "Predicting Disease Progression from Short Biomarker Series using Expert Advice Algorithm," Scientific Reports, Vol.5, Article No.8953, pp.1--12 (2015).
- Y. Kakizoe, S. Nakaoka, C.A.A. Beauchemin, S. Morita, H. Mori, T. Igarashi, K. Aihara, T. Miura, and S. Iwami: "A Method to Determine the Duration of the Eclipse Phase for
*in Vitro*Infection with a Highly Pathogenic SHIV Strain," Scientific Reports, Vol.5, Article No.10371, pp.1-14 (2015). - T. Mitsui, M. Crucifix, and K. Aihara: "Bifurcations and Strange Nonchaotic Attractors in a Phase Oscillator Model of glacial interglacial Cycles," Physica D, Vol.306, pp.25-33 (2015).
- M.A. Dahlem, J. Kurths, M.D. Ferrari, K. Aihara, M. Scheffer, and A. May: "Understanding Migraine using Dynamic Network Biomarkers," Cephalalgia, Vol.35, No.7, pp.627-630 (2015).
- M. Inoue, J. Imura, K. Kashima, M. Suzuki, and Kazuyuki Aihara: "Absolute Instability of Lur'e Systems and its Application to Oscillation Analysis of Uncertain Genetic Networks," International Journal of Robust and Nonlinear Control, Vol.25, No.18, pp.3746-3762 (2015).
- Y. Hirata, K. Morino, K. Akakura, C.S. Higano, N. Bruchovsky, T. Gambol, S. Hall, G. Tanaka, and K. Aihara: "Intermittent Androgen Suppression: Estimating Parameters for Individual Patients Based on Initial PSA Data in Response to Androgen Deprivation Therapy," PLOS ONE, Vol.10, No.6, e0130372-1-15 (2015).
- M.A.S. Kamal, J. Imura, T. Hayakawa, A. Ohata, and K. Aihara: "A Vehicle-Intersection Coordination Scheme for Smooth Flows of Traffic Without Using Traffic Lights," IEEE Transactions on Intelligent Transportation Systems, Vol.16, No.3, pp.1136-1147 (2015).
- H. Ikeda, A. Godinho-Santos, S. Rato, B. Vanwalscappel, F. Clavel, K. Aihara, S. Iwami, and F. Mammano: "Quantifying the Antiviral Effect of IFN on HIV-1 Replication in Cell Culture," Scientific Reports, Vol.5, Article No.11761, pp.1-7 (2015).
- M. Inoue, H. Ikuta, S. Adachi, J. Imura, and K. Aihara: "A Computational Method for Robust Bifurcation Analysis and Its Application to Biomolecular Systems," International Journal of Bifurcation and Chaos, Vol.25, No.7, 1540012-1-11 (2015).
- B.-G. Zhang, G. Tanaka and K. Aihara, M. Honda, S. Kaneko, and L. Chen: "Dynamics of an HBV Model with Drug Resistance Under Intermittent Antiviral Therapy," International Journal of Bifurcation and Chaos, Vol.25, No.7, 1540011-1-12 (2015).
- T. Ishizaki, K. Kashima, A. Girard, J. Imura, L. Chen, K. Aihara: "Clustered Model Reduction of Positive Directed Networks," Automatica, Vol.59, pp.238-247 (2015).
- S. Iwami, K. Sato, S. Morita, H. Inaba, T. Kobayashi, J.S. Takeuchi, Y. Kimura, N. Misawa, F. Ren, Y. Iwasa, K. Aihara, and Y. Koyanagi: "Pandemic HIV-1 Vpu Overcomes Intrinsic Herd Immunity Mediated by Tetherin," Scientific Reports, Vol.5, Article No.12256, pp.1-8 (2015).
- Y. Hirata and K. Aihara: "Ability of Intermittent Androgen Suppression to Selectively Create a Non-trivial Periodic Orbit for a Type of Prostate Cancer Patients," Journal of Theoretical Biology, Vol.384, pp.147-152 (2015).
- N. Takahashi, Y. Hirata, K. Aihara, and P. Mas: "A Hierarchical Multi-oscillator Network Orchestrates the Arabidopsis Circadian System," Cell, Vol.163, No.1, pp.148-159 (2015).
- P. Chen, R. Liu, L. Chen, and K. Aihara: "Identifying Critical Differentiation State of MCF-7 Cells for Breast Cancer by Dynamical Network Biomarkers," Frontiers in Genetics, Vol.6, Article No.252, pp.1-7 (2015).
- M. Ohtaki, T. Tonda, and K. Aihara: "A two-phase Poisson Process Model and its Application to Analysis of Cancer Mortality among A-bomb Survivors," Mathematical Biosciences, Vol.268, pp.31-37 (2015).
- S. Iwami, J.S. Takeuchi, S. Nakaoka, F. Mammano, F. Clavel, H. Inaba, T. Kobayashi, N. Misawa, K. Aihara, Y. Koyanagi, K. Sato: "Cell-to-cell infection by HIV contributes over half of virus infection," eLife, Vol.4, e08150, pp.1-16 (2015).
- Y. Hirata, T. Takeuchi, S. Horai, H. Suzuki, and K. Aihara: "Parsimonious Description for Predicting High-dimensional Dynamics," Scientific Reports, Vol.5, Article No.15736, pp.1-6 (2015).
- M. Inoue, J. Imura, K. Kashima, M. Suzuki, and K. Aihara: "Absolute Instability of Lur'e Systems and its Application to Oscillation Analysis of Uncertain Genetic Networks," International Journal of Robust and Nonlinear Control, Vol.25, No.18, pp.3746-3762 (2015).
- R. Liu, P. Chen, K. Aihara, and L. Chen: "Identifying Early-warning Signals of Critical Transitions with Strong Noise by Dynamical Network Markers," Scientific Reports, Vol.5, Article No.17501, pp.1-13 (2015).
- T. Ueta, D. Ito, and K. Aihara: "Can a Pseudo Periodic Orbit Avoid a Catastrophic Transition?," International Journal of Bifurcation and Chaos, Vol.25, No.13, 1550185, pp.1-10 (2015).
- Y. Hirata and K. Aihara:"Edit Distance for Marked Point Processes Revisited: An Implementation by Binary Integer Programming," Chaos, Vol.25, No.12, 123117 (2015).
- M. Fukino, Y. Hirata and K. Aihara: "Coarse-graining Time Series Data: Recurrence Plot of Recurrence Plots and its Application for Music," Chaos, Vol.26, 023116-1-12 (2016).
- T. Sase, J.P. Ramirez, K. Kitajo, K. Aihara, and Y. Hirata: "Estimating the Level of Dynamical Noise in Time Series by using Fractal Dimensions," Physics Letters A, Vol.380, No.11-12, pp.1151-1163 (2016).
- Y. Hirata, K. Morino, T. Suzuki, Q. Guo, "System Identification and Parameter Estimation in Mathematical Medicine: Examples Demonstrated for Prostate Cancer," Quantitative Biology, Vol.4, No.1, pp.13-19 (2016).
- Y. Tone, H. Asahara, D. Ito, T. Ueta, K. Aihara, and T. Kousaka: "Calculation of Local Bifurcation Points in Piecewise Nonlinear Discrete-Time Dynamical Systems," Electronics and Communications in Japan, Vol.9, No.3, pp.22-30 (2016).
- D. Ito, T. Ueta, T. Kousaka, and K. Aihara: "Bifurcation Analysis of the Nagumo-Sato Model and its Coupled Systems," International Journal of Bifurcation and Chaos, Vol.28, No.3, 1630006-1-11 (2016).
- T.J. Kobayashi, R. Yokota, K. Aihara: "Feedback Regulation and Its Efficiency in Biochemical Networks," Journal of Statistical Physics, Vol.162, No.5, pp.1425-1449 (2016).
- C.I. Tajima, S. Tajima, K. Koida, H. Komatsu, K. Aihara, and H. Suzuki: "Population Code Dynamics in Categorical Perception," Scientific Reports, Vol.6, Article No.22536, pp.1-13 (2016).
- H. Ikeda, S. Nakaoka, R.J. de Boer, S. Morita, N. Misawa, Y. Koyanagi, K. Aihara, K. Sato, and S. Iwami: "Quantifying the Effect of Vpu on the Promotion of HIV-1 Replication in the Humanized Mouse Model," Retrovirology, Vol.13, Article No.23, pp.1-5 (2016).
- E. Fujioka, I. Aihara, M. Sumiya, K. Aihara, and S. Hiryu: "Echolocating Bats Use Future-target Information for Optimal Foraging," Proceedings of the National Academy of Sciences of the United States of America, Vol.113, No.17, pp.4848-4852 (2016).
- Y. Hirata and K. Aihara: "Predicting Ramps by Integrating Different Sorts of Information," The European Physical Journal Special Topics, Vol.225, No.3, pp.513-525 (2016).
- B. Wang, H. Suzuki, and K. Aihara: "Enhancing Synchronization Stability in a Multi-area Power Grid," Scientific Reports, Vol.6, 26596-1-11 (2016).
- K. Iwayama, L. Zhu, Y. Hirata, M. Aono, M. Hara, and K. Aihara: "Decision-making Ability of Physarum Polycephalum Enhanced by its Coordinated Spatiotemporal Oscillatory Dynamics," Bioinspiration & Biomimetics, Vol.11, No.3, 036001 (2016).
- T. Kohno, M. Sekikawa, J. Li, T. Nanami, and K. Aihara: "Qualitative-Modeling-Based Silicon Neurons and Their Networks," Frontiers in Neuroscience, Vol.10, Article No.273, pp.1-16 (2016).
- M. Komuro, K. Kamiyama, T. Endo, and K. Aihara: "Quasi-Periodic Bifurcations of Higher-Dimensional Tori," International Journal of Bifurcation and Chaos, Vol.26, No.7, 1630016-1-40 (2016).
- D. Collerton, J.-P. Taylor, I. Tsuda, H. Fujii, S. Nara, K. Aihara, and Y. Katori: "How Can We See Things That Are Not There? Current Insights into Complex Visual Hallucinations," Journal of Consciousness Studies, Vol.23, No.7-8, pp.195-227 (2016).
- R. Hosaka, T. Nakajima, K. Aihara, Y. Yamaguchi, and H. Mushiake: "The Suppression of Beta Oscillations in the Primate Supplementary Motor Complex Reflects a Volatile State During the Updating of Action Sequences," Cerebral Cortex, Vol.26, No.8, pp.3442-3452 (2016).
- Y. Hirata, J.M. Amigo, Y. Matsuzaka, R. Yokota, H. Mushiake, K. Aihara: "Detecting Causality by Combined Use of Multiple Methods: Climate and Brain Examples," PLOS ONE, Vol.11, No.7, e0158572, pp.1-15 (2016).
- T. Otsuki and K. Aihara: "New Variable Depth Local Search for Multiple Depot Vehicle Scheduling Problems," Journal of Heuristics, Vol.22, No.4, pp.567-585 (2016).
- Y. Shimada, Y. Hirata, T. Ikeguchi, and K. Aihara: "Graph Distance for Complex Networks," Scientific Reports, Vol.6, Article No.34944, pp.1-6 (2016).
- Y. Hirata, Arisa Oda, Kunihiro Ohta, and K. Aihara: "Three-dimensional Reconstruction of Single-cell Chromosome Structure using Recurrence Plots," Scientific Reports, Vol.6, Article No.34982, pp.1-9 (2016).
- Y. Hirata, K. Iwayama, and K. Aihara: "Possibility of Short-term Probabilistic Forecasts for Large Earthquakes Making Good Use of the Limitations of Existing Catalogs," Physical Review E, Vol.94, No.4, 042217, pp.1-14 (2016).
- P.L. McMahon, A. Marandi, Y. Haribara, R. Hamerly, C. Langrock, S. Tamate, T. Inagaki, H. Takesue, S. Utsunomiya, K. Aihara, R.L. Byer, M.M. Fejer, H. Mabuchi, and Y. Yamamoto: "A Fully-programmable 100-spin Coherent Ising Machine with All-to-all Connections," Science, Vol.354, No.6312, pp.614-617 (2016).
- T. Inagaki, Y. Haribara, K. Igarashi, T. Sonobe, S. Tamate, T. Honjo, A. Marandi, P.L. McMahon, T. Umeki, K. Enbutsu, O. Tadanaga, H. Takenouchi, K. Aihara, K. Kawarabayashi, K. Inoue, S. Utsunomiya, and H. Takesue: "A Coherent Ising Machine for 2000-node Optimization Problems," Science, Vol.354, No.6312, pp.603-606 (2016).
- K. Inoue, H. Shinohara, M. Behar, N. Yumoto, G. Tanaka, A. Hoffmann, K. Aihara, and M. Okada-Hatakeyama: "Oscillation Dynamics Underlie Functional Switching of NF-$\kappa$B for B-cell Activation," Systems Biology and Applications, Vol.2, Article No.16024, pp.1-9 (2016).
- T. Omi, Y. Ogata, K. Shiomi, B. Enescu, K. Sawazaki, and K. Aihara: "Automatic Aftershock Forecasting: A Test Using Real-Time Seismicity Data in Japan," Bulletin of the Seismological Society of America, Vol.106, No.6, pp.2450-2458 (2016).
- H. Sakaguchi, K. Ogata, T. Isomura, S. Utsunomiya, Y. Yamamoto, and K. Aihara: "Boltzmann Sampling by Degenerate Optical Parametric Oscillator Network for Structure-Based Virtual Screening," Entropy, Vol.18, No.10, Article No.365, pp.1-11 (2016).
- C.T. Urabe, G. Tanaka, K. Aihara, and M. Mimura: "Parameter Scaling for Epidemic Size in a Spatial Epidemic Model with Mobile Individuals," PLOS ONE, Vol.11, No.12, e0168127, pp.1-16 (2016).
- X. Liu, Y. Wang, H. Ji, K. Aihara, and L. Chen: "Personalized Characterization of Diseases using Sample-specific Networks," Nucleic Acids Research, Vol.44, No.22, e164, pp.1-18 (2016).
- J.M. Amigó, Y. Hirata, and K. Aihara: "On the Limits of Probabilistic Forecasting in Nonlinear Times Series Analysis," Chaos, Vol.26, No.12, pp.123114-1-7 (2016).
- Takashi Kohno, Munehisa Sekikawa, and Kazuyuki Aihara: "A Configurable Qualitative-modeling-based Silicon Neuron Circuit," IEICE NOLTA Journal, Vol.8, No.1, pp.25-37 (2017).
- T. Yuan, K. Aihara, and G. Tanaka: "Robustness and Fragility in Coupled Oscillator Networks under Targeted Attacks," Physical Review E, Vol.95, No.1, 012315, pp.1-6 (2017).
- K. Iwayama, Y. Hirata, and K. Aihara: "Definition of Distance for Nonlinear Time Series Analysis of Marked Point Process Data," Physics Letters A, Vol.381, pp.257-262 (2017).
- H. San, R. Sugawara, M. Hotta, T. Matsuura, and K. Aihara: "A 12-bit 1.25MS/s Area-Efficient Radix-Value Self-Estimated Non-Binary Cyclic ADC with Relaxed Requirements on Analog Components," IEICE Transactions on Fundamentals of Electronics, Communications and Computer Sciences, Vol.E100-A, No.2, pp.534-540 (2017).
- T. Leleu, Y. Yamamoto, S. Utsunomiya, and K. Aihara: "Combinatorial Optimization using Dynamical Phase Transitions in Driven-dissipative Systems," Physical Review E, Vol.95, No.2, 022118, pp.1-18 (2017).
- M. Nagata, Y. Hirata, N. Fujiwara, G. Tanaka, H. Suzuki, and K. Aihara: "Smoothing Effect for Spatially Distributed Renewable Resources and its Impact on Power Grid Robustness," Chaos, Vol.27, Article No.033104, pp.1-7 (2017).
- K. Kamiyama, M. Komuro, and K. Aihara: "Homoclinic Cycle Bifurcations in Planar Maps," International Journal of Bifurcation and Chaos, Vol.27, No.3, 1730012, pp.1-11 (2017).
- T. Sase, Y. Katori, M. Komuro, and K. Aihara: "Bifurcation Analysis on Phase-Amplitude Cross-Frequency Coupling in Neural Networks with Dynamic Synapses," Frontiers Computational Neuroscience, Vol.11, Article No.1830, pp.1-19 (2017).
- Y. Li, M. Oku, G. He, and K. Aihara: "Elimination of Spiral Waves in a Locally Connected Chaotic Neural Network by a Dynamic Phase Space Constraint," Neural Networks, Vol.88, pp.9-21 (2017).
- Y. Hirata and K. Aihara: "Improving Time Series Prediction of Solar Irradiance after Sunrise: Comparison among Three Methods for Time Series Prediction," Solar Energy, Vol.149, pp.294-301 (2017).
- P. Christodoulides, Y. Hirata, E. Domínguez-Hüttinger, S.G. Danby, M.J. Cork, H.C. Williams, K. Aihara, and R.J. Tanaka: "Computational Design of Treatment Strategies for Proactive Therapy on Atopic Dermatitis using Optimal Control Theory," Philosophical Transactions of the Royal Society Series A, Vol.375, No.2096, DOI: 10.1098/rsta.2016.0285 (2017).
- H.-L. Zou, Z.-C. Deng, W.-P. Hu, K. Aihara, and Y.-C. Lai: "Partially Unstable Attractors in Networks of Forced Integrate-and-fire Oscillators," Nonlinear Dynamics, Vol.89, No.2, pp.887-900 (2017).
- X. Liu, X. Chang, R. Liu, X. Yu, L. Chen, and K. Aihara: "Quantifying Critical States of Complex Diseases using Single-sample Dynamic Network Biomarkers," PLOS Computational Biology, Vol.13, No.7, e1005633, pp.1-21 (2017).
- T. Omi, Y. Hirata, and K. Aihara: "Hawkes Process Model with a Time-dependent Background Rate and its Application to High-frequency Financial Data," Physical Review E, Vol.96, Article No.012303, pp.1-10 (2017).
- M.K. Kajita, K. Aihara, and T.J. Kobayashi: "Balancing Specificity, Sensitivity, and Speed of Ligand Discrimination by Zero-order Ultraspecificity," Physical Reveiw E, Vol.96, No.1, 012405, pp.1-14 (2017).
- S. Tajima, K. Koida, C.I. Tajima, H. Suzuki, K. Aihara, and H. Komatsu: "Task-dependent Recurrent Dynamics in Visual Cortex," eLife Vol.6, e26868, pp.1-28 (2017).
- Y. Haribara, H. Ishikawa, S. Utsunomiya, K. Aihara, and Y. Yamamoto: "Performance Evaluation of Coherent Ising Machines Against Classical Neural Networks," Quantum Science and Technology, Vol.2, No.4, 044002, pp.1-8 (2017).
- J.M. Amigó, Y. Hirata, and K. Aihara: "On the Limits of Probabilistic Forecasting in Nonlinear Time Series Analysis II: Differential Entropy," Chaos, Vol.27, No.8, 083125, pp.1-9 (2017).
- F. Duan, K. Watanabe, Y. Yoshimura, M. Kikuchi, Y. Minabe, K. Aihara: "Detection of Atypical Network Development Patterns in Children with Autism Spectrum Disorder using Magnetoencephalography," PLOS ONE, Vol.12, No.9, e0184422, pp.1-25 (2017).
- Y. Hirata and K. Aihara: "Dimensionless Embedding for Nonlinear Time Series Analysis," Physical Review E, Vol.96, No.3, 032219, pp.1-15 (2017).
- M. Xu, Y. Katori, and K. Aihara: "Stability Analysis on Sparsely Encoded Associative Memory with Short-Term Synaptic Dynamics," International Journal of Bifurcation and Chaos, Vol.27, No.10, 1730034, pp.1-18 (2017).
- T. Shoji, K. Aihara, and Y. Yamamoto: "Quantum Model for Coherent Ising Machines: Stochastic Differential Equations with Replicator Dynamics," Physical Review A, Vol.96, No.5, 053833, pp.1-8 (2017).
- A. Yamamura, K. Aihara, and Y. Yamamoto: "Quantum Model for Coherent Ising Machines: Discrete-time Measurement Feedback Formulation," Physical Review A, Vol.96, No.5, 053834, pp.1-8 (2017).
- Y. Yamamoto, K. Aihara, T. Leleu, K. Kawarabayashi, S. Kako, M. Fejer, Kyo Inoue, and Hiroki Takesue: "Coherent Ising Machines -- Optical Neural Networks Operating at the Quantum Limit," NPJ Quantum Information, Vol.3, Article No.49, pp.1-15 (2017).
- B. Schäfer, C. Beck, K. Aihara, D. Witthaut, and M. Timme: "Non-Gaussian Power Grid Frequency Fluctuations Characterized by Lévy-stable Laws and Superstatistics," Nature Energy, Vol.3, No.2, pp.119-126 (2018) (arxiv:1807.08496).
- H. Sakaguchi, S. Tamate, Y. Yamamoto, K. Aihara, and S. Utsunomiya: "Community Detection by Laser Network Dynamics, Journal of Physics Communications, Vol.2, No.1, 015005, pp.1-8 (2018).
- Y. Hirata, K. Morino, K. Akakura, C.S. Higano, and K. Aihara: "Personalizing Androgen Suppression for Prostate Cancer Using Mathematical Modeling"," Scientific Reports, Vol.8, Article No.2673, pp.1-8 (2018).
- T. Levi, Y. Guo, K. Aihara, and T. Kohno: "Study of Real-time Biomimetic CPG on FPGA: Behavior and Evolution," Journal of Robotics Networking and Artificial Life, Vol.4, No.4, pp.299-302 (2018).
- K. Aihara (Invited): "Recent Progress in Mathematical Modelling of Complex Systems," Nonlinear Theory and Its Applications, IEICE, Vol.9, No.2, pp.149-154 (2018).
- M. Oku and K. Aihara: "On the Covariance Matrix of the Stationary Distribution of a Noisy Dynamical System," Nonlinear Theory and Its Applications, IEICE, Vol.9, No.2, pp.166-184 (2018).
- S. Uenohara, T. Morie, H. Tamukoh, and K. Aihara: "A Pulse-width-modulation Mode CMOS Integrated Circuit Implementation of Threshold-coupled Map," Nonlinear Theory and Its Applications, IEICE, Vol.9, No.2, pp.268-280 (2018).
- T. Leleu, T. Levi, T. Kohno, and K. Aihara: "Network Structure Reconstruction using Packets of Spikes in Cultured Neuronal Networks Coupled to Microelectrode Arrays," Nonlinear Theory and Its Applications, IEICE, Vol.9, No.2, pp.281-294 (2018).
- H. Sugahara, N. Kamata, Y. Toda, M. Kato, and K. Aihara: "[[Integration of Incinerator Plants and Utilization of Forest Biomass on the Basis of FIT,>https://onlinelibrary.wiley.com/doi/full/10.1002/eej.22991 Electrical Engineering in Japan, Vol.202, No.1, pp.11--28 (2018). (Translated from Denki Gakkai Ronbunshi, Vol.135-B, No.4, pp.213--223 (2015).
- T. Levi, T. Nanami, A. Tange, K. Aihara, and T. Kohno: "Development and Applications of Biomimetic Neuronal Networks Toward BrainMorphic Artificial Intelligence," IEEE Transactions on Circuits and Systems-II: Express Briefs, Vol.65, No.5, pp.577-581 (2018).
- D. Ito, T. Ueta, K. Aihara: "Bifurcation Analysis of Eight Coupled Degenerate Optical Parametric Oscillators," Physica D, Vol.372, pp.22-30 (2018).
- G. Tanaka, E. Dominguez-Huttinger, P. Christodoulides, K. Aihara, and R.J. Tanaka: "Bifurcation Analysis of a Mathematical Model of Atopic Dermatitis to Determine Patient-specific Effects of Treatments on Dynamic Phenotypes," Journal of Theoretical Biology, Vol.448, pp.66-79 (2018).
- H. Ma, S. Leng, K. Aihara, W. Lin, and L. Chen: "Randomly Distributed Embedding Making Short-term High-dimensional Data Predictable," Proceedings of the National Academy of Sciences of the United States of America, Vol.115, No.43, pp.E9994-E10002 (2018-10-8).
- H. Miyahara and K. Aihara: "Work Relations with Measurement and Feedback Control on Nonuniform Temperature Systems," Physical Review E, Vol.98, 042138-1-6 (2018-10-23).
- R. Liu, J. Wang, M. Ukai, K. Sewon, P. Chen, Y. Suzuki, H. Wang, K. Aihara, M. Okada-Hatakeyama, L. Chen: "Hunt for the Tipping Point during Endocrine Resistance Process in Breast Cancer by Dynamic Network Biomarkers," Journal of Molecular Cell Biology, mjy059, pp.1-16 (2018).
- N. Sviridova, T. Zhao, K. Aihara, K. Nakamura, and A. Nakano: "Photoplethysmogram at Green Light: Where Does Chaos Arise from?" Chaos, Solitons & Fractals, Vol.116, pp.157-165 (2018).
- K. Morino, G. Tanaka, and K. Aihara: "Bifurcation Mechanism for Emergence of Spontaneous Oscillations in Coupled Heterogeneous Excitable Units," Physical Review E, Vol.98, No.5, 052210-1-15 (2018).
- X. Liu, X. Chang, S. Leng, H. Tang, K. Aihara, and L. Chen: "Detection for Disease Tipping Points by Landscape Dynamic Network Biomarkers," National Science Review, nwy162 (2018).
- S. Tsuji and K. Aihara: "Criterion for Determining the Optimal Delay of Attractor Reconstruction using Persistent Homology," Nonlinear Theory and Its Applications, IEICE, No.10, No.1, pp.74-89 (2019).
- T. Omi, Y. Ogata, K. Shiomi, B. Enescu, K. Sawazaki, and K. Aihara: "Implementation of a Real-Time System for Automatic Aftershock Forecasting in Japan," Seismological Research Letters, Vol.90, No.1, pp.242-250 (2019).
- T. Leleu, Y. Yamamoto, P.L. McMahon, and K. Aihara: "Destabilization of Local Minima in Analog Spin Systems by Correction of Amplitude Heterogeneity," Physical Review Letters, Vol.122, 040607-1-6 (2019).
- S. Okuno, K. Aihara, and Y. Hirata: "Combining Multiple Forecasts for Multivariate Time Series via State-dependent Weighting," Chaos, Vol.29, No.3, 033128-1-11 (2019).
- Y. Li, H. Kokubu, and K. Aihara: "Explicit Transversality Conditions and Local Bifurcation Diagrams for Bogdanov -- Takens Bifurcation on Center Manifolds," Physica D, Vol.39, pp.52-65 (2019).
- K. Koizumi, M. Oku, S. Hayashi, A. Inujima, N. Shibahara, L. Chen, Y. Igarashi, K. Tobe, S. Saito, M. Kadowaki, and K. Aihara: "Identifying Pre-disease Signals Before Metabolic Syndrome in Mice by Dynamical Network Biomarkers," Scientific Reports, Vol.9, Article No.8767, pp.1-11 (2019).
- H. Tamura, Y. Katori, K. Aihara: "Possible Mechanism of Internal Visual Perception: Context-dependent Processing by Predictive Coding and Reservoir Computing Network," Journal of Robotics, Networking and Artificial Life, Vol.6, No.1, pp.42-47 (2019).
- T. Kanamaru and K. Aihara: "Acetylcholine-mediated Top-down Attention Improves the Response to Bottom-up Inputs by Deformation of the Attractor Landscape," PLOS ONE, Vol.14, No.10, e0223592, pp.1-23 (2019).
- T. Matsumori, H. Sakai, and K. Aihara: "Early-warning Signals using Dynamical Network Markers Selected by Covariance," Physical Review E, Vol.100, No.5, 052303, pp.1-9 (2019).
- J. Shi, T. Li, L. Chen, and K. Aihara: "Quantifying Pluripotency Landscape of Cell Differentiation from scRNA-seq Data by Continuous Birth-death Process," PLOS Computational Biology, Vol.15, No.11, pp.1-17 (2019).
- K. Tokuda, Y. Katori, and K. Aihara: "Chaotic Dynamics as a Mechanism of Rapid Transition of Hippocampal Local Field Activity between Theta and Non-theta States," Chaos, Vol.29, No.11, 113115, pp.1-16 (2019).
- Y. Itoh, S. Uenohara, M. Adachi, T. Morie, and K. Aihara: "Reconstructing Bifurcation Diagrams Only from Time-series Data Generated by Electronic Circuits in Discrete-time Dynamical Systems," Chaos, Vol.30, No.1, 013128-1-11 (2020).
- S. Okuno, K. Aihara, and Y. Hirata: "Forecasting high-dimensional Dynamics Exploiting Suboptimal Embeddings," Scientific Reports, Vol.10, Article No.664, pp.1-11 (2020).
- M.K. Kajita, K. Aihara, and T.J. Kobayashi: "Reliable Target Ligand Detection by Noise-induced Receptor Cluster Formation," Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol.30, No.1, 011104-1-6 (2020).
- H. Yamashita, K. Aihara, and H. Suzuki: "Timescales of Boolean Satisfiability Solver using Continuoustime Dynamical System," Communications in Nonlinear Science and Numerical Simulation, Vol.84, Article No.105183 (2020).
- S. Leng, H. Ma, J. Kurts, Y.-C. Lai, W. Lin, K. Aihara, and L. Chen: "Partial Cross Mapping Eliminates Indirect Causal Influences," Nature Communications, Vol.11, Article No.2632, pp.1-9 (2020).

Last-modified: 2020-05-28 (木) 14:29:10 (1d)