## Papers (2001-2010)

- I. Tokuda, T. Yanai and K. Aihara: "Reconstruction of Chaotic Dynamics via a Network of Stochastic Resonance Neurons and its Application to Speech", Artificial Life and Robotics, Vol. 5, pp. 33-39 (2001).
- G. Froyland and K. Aihara: "Estimating Statistics of Neuronal Dynamics via Markov Chains", Biol. Cybern., Vol. 84, pp. 31-40 (2001).
- L. Chen and K. Aihara: "Stability and Bifurcation Analysis of Differential - Difference - Algebraic Equations", IEEE Trans. Circuits and Systems - I: Fundamental Theory and Applications, Vol. 48, No. 3, pp. 308-326 (2001).
- M. Watanabe, K. Nakanishi and K. Aihara: "Solving the Binding Problem of the Brain with Bi-directional Functional Connectivity", Neural Networks, Vol. 14, pp. 395-406 (2001).
- M. Komuro and K. Aihara : "Hierarchical Structure among Invariant Subspaces of Chaotic Neural Networks", Japan Journal of Industrial and Applied Mathematics, Vol. 18, No. 2, pp. 335-357 (2001).
- J. Kuroiwa, S. Nara and K. Aihara: "Response Properties of a Single Chaotic Neuron to Stochastic Inputs", International Journal of Bifurcation and Chaos, Vol. 11, No. 5, pp. 1447-1460 (2001).
- N. Ichinose and K. Aihara: "Detection of Mutual Determinism between a Pair of Spike Trains", Biological Cybernetics, Vol. 85, pp. 327-333 (2001).
- O. Araki and K. Aihara: "Dual Information Representation with Stable Firing Rates and Chaotic Spatiotemporal Spike Patterns in a Neural Network Model", Neural Computation, Vol. 13, No. 12, pp.2799-2822 (2001).
- N. Masuda and K. Aihara: "Synchronization of Pulse-coupled Excitable Neurons", Physical Review E, Vol. 64, 051906, pp. 1-13 (2001).
- J.K. Ryeu, K. Aihara and I. Tsuda: "Fractal Encoding in a Chaotic Neural Network", Physical Review E, Vol. 64, 046202, pp. 1-6 (2001).
- H. Kitajima, T. Yoshinaga, K. Aihara and H. Kawakami: "Chaotic Bursts and and Bifurcation in Chaotic Neural Networks with Ring Structure", International Journal of Bifurcation and Chaos, Vol. 11, No. 6, pp. 1631-1643 (2001).
- I. Tokuda, T. Miyano and K. Aihara: "Surrogate Analysis for Detecting Nonlinear Dynamics in Normal Vowels", Journal of the Acoustical Society of America, Vol. 110, No. 6, pp. 3207-3217 (2001).
- K. Aihara and J.K. Ryeu: "Chaotic Neurons and Analog Computation" Behavioral and Brain Sciences, Vol. 24, No. 5, pp. 810-811 (2001).
- H. Ito and K. Aihara: "Combination of the Actor/Critic Algorithm with Goal-Directed Reasoning, and the Appearance and Disappearance of Hierarchical Structure", submitted to Artificial Life and Robotics.
- Y. Sakumura and K. Aihara : "Stochastic Resonance and Coincidence Detection in Single Neurons", Neural Processing Letters, Vol. 16, No. 3, pp. 235-242 (2002-12).
- R. Nanba, M. Hasegawa, T. Nisita and K. Aihara: "Optimization using Chaotic Neural Networks and its Application to Lighting Design", Control and Cybernetics, Vol. 31, No. 2, pp. 249-269 (2002).
- N. Masuda and K. Aihara: "Dynamical Characteristics of Discretized Chaotic Permutations", International Journal of Bifurcation and Chaos, Vol. 12, No. 10, pp. 2087-2103 (2002).
- L. Chen and K. Aihara: "A Model of Periodic Oscillations for Generic Regulatory Systems", IEEE Trans. CAS-I, Vol. 49, No. 10, pp. 1429-1436 (2002).
- K. Aihara and I. Tokuda : "Possible Neural Coding with Inter-Event Intervals of Synchronous Firing", Phys. Rev. E, Vol. 66, 026212 (2002).
- K. Aihara: "Chaos Engineering and its Application to Parallel Distributed Processing with Chaotic Neural Networks", Proceedings of the IEEE, Vol. 90, No. 5, 919-930 (2002).
- N. Masuda and K. Aihara: "Cryptosystems with Discretized Chaotic Maps", IEEE Trans. CAS 1, Vol. 49, No. 1, pp. 28-40 (2002).
- J. Matsuoka, Y. Sekine, K. Saeki, and K. Aihara: "Analog Hardware Implementation of a Mathematical Model of an Asynchronous Chaotic Neuron", IEICE Trans. Fundamentals, Vol. E85-A, No. 2, pp. 389-394 (2002-2).
- Z. Wang, and K. Aihara: "A Fuzzy-Like Phenomenon in Chaotic Autoassociative Memory", IEICE Trans. Fundamentals, Vol. E85-A, No. 3, pp. 714-722 (2002-3).
- T. Iwamoto, Y. Jimbo, and K. Aihara: "Extracting Temporal Firing Patterns of Neurons from Noisy Data", IEICE Trans. Fundamentals, Vol. E85-A, No. 4, pp. 892-902 (2002-4).
- L. Chen and K. Aihara: "Stability of Genetic Regulatory Networks with Time Delay", IEEE Trans. Circuits and Systems - I: Fundamental Theory and Applications, Vol. 49, No. 5, pp. 602-608 (2002).
- N. Masuda and K. Aihara: "Spatiotemporal Spike Encoding of a Continuous External Signal", Neural Computation, Vol. 14, pp. 1599-1628 (2002).
- M. Hasegawa, T. Ikeguchi and K. Aihara: "A Novel Chaotic Search for Quadratic Assignment Problems", European Journal of Operational Research, Vol. 139, pp. 543-556 (2002).
- M. Hasegawa, T. Ikeguchi and K. Aihara: "Solving Large Scale Traveling Salesman Problems by Chaotic Neurodynamics", Neural Networks, Vol. 15, pp. 271-283 (2002).
- N. Masuda and K. Aihara: "Bridging Rate Coding and Temporal Spike Coding by Effect of Noise", Physical Review Letters, Vol. 88, No. 24, 248101 (2002).
- Y. Shinohara, T. Kanamaru, H. Suzuki, T. Horita and K. Aihara: "Array-enhanced Coherence Resonance and Forced Dynamics in Coupled Fitz Hugh-Nagumo Neurons with Noise", Physical Review E, Vol. 65, 051906 (2002).
- K. Mitsubori and K. Aihara: "Delayed-feedback Control of Chaotic Roll Motion of a Flooded Ship in Waves", Proceedings of the Royal Society of London, Series A, Vol. 458, pp. 2801-2813 (2002).
- M.A.F. Sanju'an, T. Horita and K. Aihara: "Opening a Closed Hamiltonian Map", Chaos, Vol. 13, No. 1, pp.17-24 (2003-3).
- N. Masuda and K. Aihara: "Duality of Rate Coding and Temporal Coding in Multilayered Feedforward Networks", Neural Computation, Vol. 15, pp. 103-125 (2003).
- G. Tanaka and K. Aihara: "Bifurcation Structures of Period-adding Phenomena in an Ocean Internal Wave Model," International Journal of Bifurcation and Chaos, Vol. 13, No. 11, pp.3409-3424 (2003).
- H. Kitajima, T. Yoshinaga, K. Aihara and H. Kawakami: "Itinerant Memory Dynamics and Global Bifurcations in Chaotic Neural Networks," Chaos, Vol. 13, No. 3, pp. 1122-1132 (2003).
- M. Watanabe, T. Masuda, and K. Aihara: "Forward Propaagating Reinforcement Learning -- Biologically Plausible Learning Method for Multi-Layer Networks," Bio Systems, Vol. 71, pp. 213-220 (2003).
- Y. Horio, K. Aihara, and O. Yamamoto: "Neuron-Synapse IC Chip-Set for Large-Scale Chaotic Neural Networks," IEEE Trans. Neural Networks, Vol. 14, No. 5, pp. 1393-1404 (2003).
- Z. Wang and K. Aihara: "A Fuzzy-Like Phenomenon in a Dynamic Neural Network," IEICE Trans. Fundamentals, Vol. E86-A, No. 8, pp. 2125-2135 (2003).
- N. Masuda and K. Aihara: "Spatial Prisoner's Dilemma Optimally Played in Small-world Networks," Physics Letters A, Vol. 313, pp. 55-61 (2003).
- K. Tsumoto, T. Yoshinaga, K. Aihara and H. Kawakami: "Bifurcations in Synaptically Coupled Hodgkin-Huxley Neurons with a Periodic Input," International Journal of Bifurcation and Chaos, Vol. 13, No. 3, pp. 653-666 (2003).
- H. Itoh, H. Nakahara, O. Hikosaka, R. Kawagoe, Y. Takikawa, and K. Aihara: "Correlation of Primate Caudate Neural Activity and Saccade Parameters in Reward-Oriented Behavior," J. Neurophysiol., Vol. 89, pp. 1774-1783 (2003).
- N. Masuda and K. Aihara: "Filtered Interspike Interval Encoding by Class II Neurons," Physics Letters A, Vol. 311, pp. 485-490 (2003).
- H. Takahashi and K. Aihara: "Algorithmic Analysis of Irrational Rotations in a Single Neuron Model," J. Complexity, Vol. 19, pp. 132-152 (2003).
- N. Masuda and K. Aihara: "Ergodicity of Spike Trains: When Does Trial Averaging Make Sense?," Neural Computation, Vol. 15, pp. 1341-1372 (2003).
- T. Kobayashi, L. Chen, and K. Aihara: "Modeling Genetic Switches with Positive Feedback Loops", J. Theor. Biol., Vol. 221, No. 3, pp. 379-399 (2003-4).
- Y. Ono, H. Suzuki, and K. Aihara: "Grazing Bifurcation and Mode-locking in Reconstructing Chaotic Dynamics with a Leaky Integrate-and-fire Model", Artificial Life and Robotics, Vol. 7, pp. 55-62 (2003).
- I. Tokuda, R. Tokunaga, and K. Aihara: "Back-Propagation Learning of Infinite-Dimensional Dynamical Systems", Neural Networks, Vol. 16, pp. 1179-1193 (2003).
- K. Hamaguchi, K. Aihara: "Quantitative Information Transfer through layers of Spiking Neurons Connected by Mexican-Hat-type Connectigvity," Neurocomputing, Vol. 58, No. 60, pp. 85-90 (2004).
- Y. Morishita and K. Aihara: "Noise-Reduction through Interaction in Gene Expression and Biochemical Reaction Processes", Journal of Theoretical Biology, Vol. 228, pp. 315-325 (2004).
- N. Masuda and K. Aihara: "Global and Local Synchrony of Coupled Neurons in Small-world Networks", Biological Cybernetics, Vol. 90, pp. 302-309 (2004).
- N. Masuda, N. Konno, and K. Aihara: "Transmission of Severe Acute Respiratory Syndrome in Dynamical Small-world Networks", Physical Review E, Vol. 69, 031917-1-6 (2004).
- H. Suzuki, K. Aihara and T. Okamoto: "Complex Behaviour of a Simple Partial-discharge Model", Europhysics Letters, Vol. 66, No. 1, pp. 28-34 (2004).
- T. Okamoto, M. Watanabe, K. Aihara, and S. Kondo: "An Explanation of Contextual Modulation by Short-range Isotropic Connections and Orientation Map Geometry in the Primary Visual Cortex," Biological Cybernetics, Vol.91, No.6, pp.396-407 (2004).
- H. Tanaka and K. Aihara: "Analysis of the Hodgkin-Huxley Equations with Noise: the Effects of Noise on Chaotic Neurodynamics," Artificial Life and Robotics, Vol.8, pp.190-196 (2004).
- N. Masuda, and K. Aihara: "Dual Coding and Effects of Global Feedback in Multilayered Neural Networks," Neurocomputing, Vol. 58, No. 60, pp. 33-39 (2004).
- S. Tsuji, T. Ueta, H. Kawakami, and K. Aihara: "A Design Method of Bursting using Two-parameter Bifurcation Diagrams in Fitzhugh-Nagumo Model," International Journal of Bifurcation and Chaos, Vol. 14, No. 7, pp. 2241-2252 (2004).
- M. Watanabe and K. Aihara: "A Network of Coincidence Detector Neurons with Periodic and Chaotic Dynamics," IEEE Transactions on Neural Networks, Vol. 15, No. 5, pp. 980-986 (2004-9).
- L. Chen, R. Wang, T.J. Kobayashi, and K. Aihara: "Dynamics of Gene Regulatory Networks with Cell Division Cycle," Physical Review E, Vol. 70, 011909-1-12 (2004).
- K. Aihara, I. Tsuda and H. Fujii: "Prologue - The Pioneering Work of the Late Professor Gen Matsumoto," Journal of Integrative Neuroscience, Vol. 3, No. 2, pp. 111-113 (2004).
- H. Fujii, K. Aihara, and I. Tsuda : "Functional Relevance of `Excitatory' GABA Actions in Cortical Interneurons: A Dynamical Systems Approach," Journal of Integrative Neuroscience, Vol. 3, No. 2, pp. 183-205 (2004).
- R. Tomioka, H. Kimura, T.J. Kobayashi and K. Aihara: "Multivariate Analysis of Noise in Genetic Regulatory Networks," Journal of Theoretical Biology, Vol. 229, pp. 501-521 (2004).
- J. Kuroiwa, N. Masutani, S. Nara, and K. Aihara: "Sensitive Response of a Chaotic Wandering State to Memory Fragment Inputs in a Chaotic Neural Network Model," International Journal of Bifurcation and Chaos, Vol. 14, No. 4, pp.1413-1421 (2004).
- N. Masuda and K. Aihara: "Self-organizing Dual Coding based on Spike-Time-Dependent Plasticity," Neural Computation, Vol.16, pp.627-663 (2004).
- T. Toyoizumi, J.-P. Pfister, K. Aihara, and W. Gerstner: "Generalized Bienenstock-Cooper-Munro Rule for Spiking Neurons that Maximizes Information Transmission," Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, pp. 5239-5244 (2005).
- Y. Horio, T. Taniguchi and K. Aihara: "An Asynchronous Spiking Chaotic Neuron Integrated Circuit," Neurocomputing, Vol. 64, pp. 447-472 (2005).
- G. Tanaka, M.A.F. Sanju'an, and K. Aihara: "Crisis-induced Intermittency in Two Coupled Chaotic Maps: Towards Understanding Chaotic Itinerancy," Physical Review E, Vol. 71, 016219-1-11 (2005).
- L. Chen, R. Wang, T. Zhou, and K. Aihara: "Noise-induced Cooperative Behavior in a Multi-Cell System," Bioinformatics, Vol.21, pp.2722-2729 (2005-6).
- K. Hamaguchi, M. Okada, M. Yamana, and K. Aihara: "Correlated Firing in a Feedforward Network with Mexican-Hat-Type Connectivity," Neural Computation, Vol.17, No.9, pp.2034-2059 (2005).
- K. Hamaguchi, M. Okada, S. Kubota, and K. Aihara: "Stochastic Resonance of Localized Activity Driven by Common Noise," Biological Cybernetics, Vol.92, No.6, pp.438-444 (2005).
- H. Suzuki, S. Ito and K. Aihara: "Double rotations," Discrete and Continuous Dynamical Systems, Vol.13, pp.515-532 (2005).
- T. Kohno and K. Aihara: "A MOSFET-based model on a Class--2 type of Nerve Membrane," IEEE Transactions on Neural Networks, Vol.16, No.3, pp.754-773 (2005).
- Y. Morishita, T. Kobayashi, and K. Aihara: "Evaluation of the Performance of Mechanisms for Noise Attenuation in a Single-gene Expression," Journal of Theoretical Biology, Vol.235, pp.241-264 (2005).
- K. Morita, K. Tsumoto, and K. Aihara: "Possible Effects of Depolarizing GABAA Conductance on the Neuronal Input-Output Relationship: A Modeling Study," Journal of Neurophysiology, Vol.93, pp.3504-3523 (2005).
- T. Toyoizumi, J.-P. Pfister, K. Aihara, and W. Gerstner: "Generalized Bienenstock-Cooper-Munro Rule for Spiking Neurons that Maximizes Information Transmission," Proceedings of the National Academy of Sciences of the United States of America, Vol.102, pp.5239-5244 (2005).
- K. Morita and K. Aihara: "A Network Model with Pyramidal Cells and GABAergic Non-FS Cells in the Cerebral Cortex,” Neurocomputing, Vols.65-66, pp.697-707 (2005).
- S. Kubota and K. Aihara: "Analyzing Global Dynamics of a Neural Field Model," Neural Processing Letters, Vol.21, pp.133-141 (2005).
- T. Fushiki, F. Komaki, and K. Aihara: "Nonparametric Bootstrap Prediction," Berboulli, Vol.11, No.2, pp.293-307 (2005).
- Y. Horio, T. Taniguchi and K. Aihara: "An Asynchronous Spiking Chaotic Neuron Integrated Circuit," Neurocomputing, Vol.64, pp.447-472 (2005).
- G. Tanaka, M.A.F. Sanju'an, and K. Aihara: "Crisis-Induced Intermittency in Two Coupled Chaotic Maps: Towards Understanding Chaotic Itinerancy,” Physical Review E, Vol.71, 016219-1-11 (2005).
- N. Masuda, G. Jakimoski, K. Aihara, and L. Kocarev: "Chaotic Block Ciphers: From Theory to Practical Algorithms," IEEE Transactions on Circuit and Systems-I, Vol.53, No.6, pp.1341-1352 (2006).
- T. Toyoizumi and K. Aihara: "Generalization of the Mean-field Method for Power-law Distributions," International Journal of Bifurcation and Chaos, Vol.16, No.1, pp.129-135 (2006).
- D. Battogtokh, K. Aihara, and J.J. Tyson: "Synchronization of Eukaryotic Cells by Periodic Forcing," Physical Review Letters, Vol.96, No.14, 148102 (2006).
- K. Morita, K. Tsumoto, and K. Aihara: "Bidirectional Modulation of Neuronal Responses by Depolarizing GABAergic Inputs," Biophysical Journal, Vol.90, pp.1925-1938 (2006).
- G. Tanaka, B. Ibarz, M. A.F. Sanju'an, and K. Aihara: "Synchronization and Propagation of Bursts in Networks of Coupled Map Neurons," Chaos, Vol.16, No.1, 013113, (2006).
- K. Tsumoto, H. Kitajima, T. Yoshinaga, K. Aihara, and H. Kawakami: "Bifurcations in Morris-Lecar Neuron Model," Neurocomputing, Vol.69, No.4-6, pp.293-316 (2006).
- C. Li, L. Chen, and K. Aihara: "Stochastic synchronization of genetic oscillator networks," BMC Systems Biology, Vol.1, No.6, pp.1752-0509 (2007).
- Y. Sakisaka, K. Tainaka, N. Sugimine, J. Yoshimura, T. Hayashi, K. Aihara, T. Togashi, T. Miyazaki: "A Power Law for Extinction Process in Multiple Contact Process," Journal of the Physical Society of Japan, Vol.76, No.2, 023101 (2007).
- T. Toyoizumi, J. Pfister, K. Aihara, and W. Gerstner: "Optimality Model of Unsupervised Spike-Timing-Dependent Plasticity: Synaptic Memory and Weight Distribution," Neural Computation, Vol.19, No.3, pp.639-671 (2007).
- C. Li, L. Chen, and K. Aihara: "A Systems Biology Perspective on Signal Processing in Genetic Network Motifs," IEEE Signal Processing Magazine, Vol.24, pp.136-147 (2007).
- B. Ibarz, G. Tanaka, M.A.F. Sanju'an, and K. Aihara: "Sensitivity versus resonance in two-dimensional spiking-bursting neuron models," Physical Review E, Vol.75, 041902 (2007).
- M. Sekikawa, N. Inaba and K. Aihara: "Coexisting Two Canards and their Breakdown into Chaos in the van der Pol Oscillator under Weak Periodic Perturbation," Physics Letters A, Vol.363, No.5-6, pp.404-410 (2007).
- S. Tsuji, T. Ueta, H. Kawakami, H. Fujii, and K. Aihara: "Bifurcations in Two-dimensional Hindmarsh-Rose Type Model," International Journal of Bifurcation and Chaos, Vol.17, No.3, pp.985-998 (2007).
- G. Tanaka and K. Aihara: "Collective Skipping: Aperiodic Phase Locking in Ensembles of Bursting Oscillators," Europhysics Letters, Vol.78, No.1, 10003 (2007).
- N. Masuda and K. Aihara: "Dual Coding Hypotheses for Neural Information Representation," Mathematical Biosciences, Vol.207, pp.312-321 (2007).
- H. Ando, S. Boccaletti, and K. Aihara: "Automatic control and tracking of periodic orbits in chaotic systems," Physical Review E, Vol.75, 066211 (2007).
- H. Tanaka, T. Morie and K. Aihara: "A CMOS circuit for STDP with a symmetric time window," International Congress Series, Vol.1301, pp.152-155 (2007).
- K. Morita, M. Okada, and K. Aihara: "Selectivity and Stability via Dendritic Nonlinearity," Neural Computation, Vol.19, No.7, pp.1798-1853 (2007).
- N. Masuda, M. Okada, and K. Aihara: "Filtering of Spatial Bias and Noise Inputs by Spatially Structured Neural Networks," Neural Computation, Vol.19, No.7, pp.1854-1870 (2007).
- D. P. Mandic, S. L. Goh, and K. Aihara: "Sequential Data Fusion via Vector Spaces: Fusion of Heterogeneous Data in the Complex Domain," The Journal of VLSI Signal Processing, Vol.48, No.1-2, pp.99-108 (2007).
- Z. Wang, H. Fan, and K. Aihara: "An associative network with chaotic neurons and dynamic synapse," International Journal of Bifurcation and Chaos, Vol.17, No.9, pp.3085-3097 (2007).
- K. Hamaguchi, M. Okada, and K. Aihara: "Variable Time Scales of Repeated Spike Patterns in Synfire Chain with Mexican-Hat Connectivity," Neural Computation, Vol.19, No.9, pp.2468-2491 (2007).
- M. Aono, M. Hara, and K. Aihara: "Amoeba-based neurocomputing with chaotic dynamics," Communications of the ACM, Vol.50, No.9, pp.69-72 (2007).
- K. Fujiwara, H. Fujiwara, M. Tsukada, K. Aihara: "Reproducing Bursting Interspike Interval Statistics of the Gustatory Cortex," Biosystems, Vol.90, No.2, pp.442-448 (2007).
- M. Funabashi and K. Aihara: "Modeling Birdsong Learning with a Chaotic Elman Network," Journal of Artificial Life and Robotics, Vol.11, No.2, pp.162-166 (2007).
- T. Shimada, Y. Murase, S. Yukawa, N. Ito, and K. Aihara: "A simple model of evolving ecosystems," Journal of Artificial Life and Robotics, Vol.11, No.2, pp.153-156 (2007).
- K. Fujiwara and K. Aihara: "Classification of the spike sequences by discriminating their sources of temporal correlations," Journal of Artificial Life and Robotics, Vol.11, No.2, pp.167-170 (2007).
- T. Koshizen, M. Kon, H. Prendinger, Y. Hasegawa, K. Aihara, and H. Tsujino: "User interest estimation using cross-modal computation," International Journal of Computational Intelligence Research, Vol.3, No.3, pp 177-191 (2007).
- N. Sugimine and K. Aihara: "Stability of an Equilibrium State in a Multi-infectious-type SIS Model on a Truncated Network," Journal of Artificial Life and Robotics, Vol.11, pp.157-161 (2007).
- M. D. Shrimali, S. Sinha, and K. Aihara: "Asynchronous updating induces order in threshold coupled systems," Physical Review E, Vol.76, 046212 (2007).
- C. Li, L. Chen, K. Aihara: "Stochastic Stability of Genetic Networks with Disturbance Attenuation," IEEE Transactions on Circuits and Systems II, Vol.54, No.10, pp.892-896 (2007).
- R. Wang, L. Chen and K. Aihara: "Detection of cellular rhythms and global stability within interlocked feedback systems," Mathematical Biosciences, Vol.209, No.1, pp.171-189 (2007).
- Y. Hirata, S. Horai, H. Suzuki, and K. Aihara: "Testing Serial Dependence by Random-shuffle Surrogates and the Wayland Method," Physics Letters A, Vol.370, No.3-4, pp.265-274 (2007).
- I. Aihara, S. Horai, H. Kitahata, K. Aihara, and K. Yoshikawa: "Dynamical calling behavior experimentally observed in Japanese tree frogs (Hyla japonica),'' IEICE Transactions on Fundamentals of Electronics, Communications and Computer Sciences, Vol.E90-A, No.10, pp.2154-2161 (2007).
- G. He, M. D. Shrimali, and K. Aihara: "Partial State Feedback Control of Chaotic Neural Network and its Application," Physics Letters A, Vol.371, No.3, pp.228-233 (2007).
- Y. Sato, T. Toyoizumi, and K. Aihara: "Bayesian Inference Explains Perception of Unity and Ventriloquism Aftereffect: Identification of Common Sources of Audiovisual Stimuli," Neural Computation, Vol.19, No.12, pp.3335-3355 (2007).
- K Aihara: Chaos in neurons, Scholarpedia, 3(5):1786 (2008)
- Yong Xie, Kazuyuki Aihara, and Yan Mei Kang: "Change in types of neuronal excitability via bifurcation control," Physical Review E, Vol.77, 021917-1-8 (2008).
- Xing-Ming Zhao, Luonan Chen, and Kazuyuki Aihara: "Protein Function Prediction with the Shortest Path in Functional Linkage Graph and Boosting," International Journal of Bioinformatics Research and Applications, Vol.4, pp.375-384 (2008).
- Xing-Ming Zhao, Yong Wang, Luonan Chen, and Kazuyuki Aihara: "Gene Function Prediction using Labeled and Unlabeled Data," BMC Bioinformatics, Vol.9, No.57 (2008).
- Yoshito Hirata, Danilo P. Mandic, Hideyuki Suzuki, and Kazuyuki Aihara: "Wind Direction Modelling using Multiple Observation Points," Philosophical Transactions of the Royal Society A, Vol.366, pp. 591-607 (2008).
- Kenji Morita, Rita Kalra, Kazuyuki Aihara, and Hugh P.C. Robinson: "Recurrent Synaptic Input and the Timing of Gamma-frequency-modulated Firing of Pyramidal Cells During Neocortical "UP" States," Journal of Neuroscience, Vol.28, pp.1871-1881 (2008).
- Takashi Kohno and Kazuyuki Aihara: "Mathematical-model-based Design of Silicon Burst Neurons," Neurocomputing, Vol.71, No.7-9, pp.1619-1628 (2008).
- Xing-Ming Zhao, Luonan Chen, Kazuyuki Aihara: "Protein Classification with Imbalanced Data," Proteins: Structure, Function, and Bioinformatics, Vol.70, No.4, pp.1125-1132 (2008).
- Guoguang He, Manish Dev Shrimali and Kazuyuki Aihara: "Threshold Activated Control of Chaotic Neural Network," Neural Networks, Vol.21, pp.114-121 (2008).
- Munehisa Sekikawa, Naohiko Inaba, Takashi Tsubouchi, and Kazuyuki Aihara: "Analysis of Torus Breakdown into Chaos in a Constraint Duffing van der Pol Oscillator," International Journal of Bifurcation and Chaos, Vol.18, No.4, pp.1051-1068 (2008).
- Hirokazu Tozaki, Tetsuya J. Kobayashi, Hiroyuki Okano, Ryo Yamamoto, Kazuyuki Aihara, and Hidenori Kimura: "Reconstructing the Single-cell-level Behavior of a Toggle Switch from Population-level Measurements," FEBS Letter, Vol.582, No.7, pp.1067-1072 (2008).
- Makito Oku and Kazuyuki Aihara: "A Mathematical Model of Planning in the Prefrontal Cortex," Artificial Life and Robotics, Vol.12, No.1-2, pp.227-231 (2008).
- Nobuaki Sugimine, Naoki Masuda, Norio Konno, and Kazuyuki Aihara: "On Global and Local Critical Points of Extended Contact Process on Homogeneous Trees," Mathematical Bioscience, Vol.213, No.1, pp.13-17 (2008).
- Xing-Ming Zhao, Rui-Sheng Wang, Luonan Chen, and Kazuyuki Aihara: "Uncovering Signal Transduction Networks from High-throughput Data by Integer Linear Programming," Nucleic Acids Research, Vol.36, No.9, e48 (2008).
- Masahiro Kawasaki, Masataka Watanabe, Jiro Okuda, Masamichi Sakagami, and Kazuyuki Aihara: "Human Posterior Parietal Cortex Maintains Color, Shape and Motion in Visual Short-term Memory," Brain Research, Vol.1213, pp.91-97 (2008).
- Yong Xie, Luonan Chen, Yan Mei Kang, and Kazuyuki Aihara: "Controlling the Onset of Hopf Bifurcation in the Hodgkin-Huxley Model," Physical Review E, Vol.77, 061921 (2008).
- Xing-Ming Zhao, Yong Wang, Luonan Chen, and Kazuyuki Aihara: "Protein Domain Annotation with Predicted Domain-Domain Interaction Networks," Protein and Peptide Letters, Vol.15, No.5, pp.456-462 (2008).
- Chunguang Li, Luonan Chen, and Kazuyuki Aihara: "Impulsive Control of Stochastic Systems with Applications in Chaos Control, Chaos Synchronization, and Neural Networks," Chaos, Vol.18, No.2, 023132 (2008).
- Manish Dev Shrimali, Sudeshna Sinha, and Kazuyuki Aihara: "Asynchronous Updating of Threshold-coupled Chaotic Neurons," Pramana-Journal of Physics, Vol.70, No.6, pp.1127-1134 (2008).
- Hiroyasu Ando, Sudeshna Sinha, and Kazuyuki Aihara: "Emergent Organization of Oscillator Clusters in Coupled Self-regulatory Chaotic Maps," Pramana-Journal of Physics, Vol.70, No.6, pp.1153-1164 (2008).
- Yoshihiko Horio and Kazuyuki Aihara: "Analog Computation through High-dimensional Physical Chaotic Neuro-dynamics," Physica D, Vol.237, No.9, pp.1215-1225 (2008).
- Yoshito Hirata, Yuichi Katori, Hidetoshi Shimokawa, Hideyuki Suzuki, Timothy A. Brenkinsop, Eric J. Lang, and Kazuyuki Aihara: "Testing a Neural Coding Hypothesis using Surrogate Data," Journal of Neuroscience Methods, Vol.172, pp.312-322 (2008).
- Bing Wang, Kazuyuki Aihara, and Luonan Chen: "Jamming in Weighted Scale-free Gradient Networks," Europhysics Letters, Vol.83, pp.28006 (2008).
- Xing-Ming Zhao, Yong Wang, Luonan Chen, and Kazuyuki Aihara: "Protein Domain Annotation with Integration of Heterogeneous Information Sources," Proteins: Structure, Function, and Bioinformatics, Vol.72, No.1, pp.461--473 (2008).
- Takashi Shimada and Kazuyuki Aihara: "A Nonlinear Model with Competition between Prostate Tumor Cells and its Application to Intermittent Androgen Suppression Therapy of Prostate Cancer," Mathematical Biosciences, Vol.214, No.1/2, pp.134-139 (2008).
- Takahisa Ogino,Yoshihiko Horio and Kazuyuki Aihara: "Analysis of Chaotic Neural Network through Mutual Information in Solving Quadratic Assignment Problems," Journal of Signal Processing, Vol.12, No.4, pp.291-294 (2008).
- Hong Fan, Zhijie Wang, Takaaki Ohnishi, Hiroo Saito, and Kazuyuki Aihara: "Multicommunity Weight-driven Bipartite Network Model," Physical Review E, Vol.78, 026103-1-7 (2008).
- Takashi Kanamaru and Kazuyuki Aihara: "[[Stochastic Synchrony of Chaos in a Pulse-Coupled Neural Network with Both Chemical and Electrical Synapses Among Inhibitory Neurons>http://www.mitpressjournals.org/doi/abs/10.1162/neco.2008.05-07-516#.VJEtRSusV8E," Neural Computation, Vol.20, pp.1951-1972 (2008).
- Hiromichi Suetani, Tatsuo Yanagita and Kazuyuki Aihara: "PULSE DYNAMICS IN COUPLED EXCITABLE FIBERS: SOLITON-LIKE COLLISION, PHASE LOCKING, AND RECOMBINATION," International Journal of Bifurcation and Chaos, Vol. 18, No. 8 pp.2289-308 (2008).
- Guoguang He, Luonan Chen, and Kazuyuki Aihara: "Associative Memory With a Controlled Chaotic Neural Network," Neurocomputing, Vol.71, pp.2794--2805 (2008).
- Ruiqi Wang, Chunguang Li, Luonan Chen, and Kazuyuki Aihara: "Modeling and Analyzing Biological Oscillations in Molecular Networks," Proceedings of the IEEE, Vol.96, pp.1361-1385 (2008).
- Kazuhiro Sakamoto, Hajime Mushiake, Naohiro Saito, Kazuyuki Aihara, Masafumi Yano, and Jun Tanji: "Discharge Synchrony during the Transition of Behavioral Goal Representations Encoded by Discharge Rates of Prefrontal Neurons," Cerebral Cortex, Vol.18, No.9, pp.2036-2045 (2008).
- Gouhei Tanaka, Kunichika Tsumoto, Shigeki Tsuji, and Kazuyuki Aihara: "Bifurcation Analysis on a Hybrid Systems Model of Intermittent Hormonal Therapy for Prostate Cancer," Physica D, Vol.237, No.20, pp.2616-2627 (2008).
- Xing-Ming Zhao, Luonan Chen, and Kazuyuki Aihara: "Protein function prediction with high-throughput data," Amino Acids, Vol.35, No.3, pp.517-530 (2008).
- Hideyuki Suzuki and Kazuyuki Aihara: "Universality in Mathematical Modeling: A Comment on Surprising Dynamics From a Simple Model," Mathematics Magazine, Vol.81, pp.291-294 (2008).
- Yoshito Hirata, Sunsuke Horai, and Kazuyuki Aihara: "Reproduction of distance matrices and original time series from recurrence plots and its applications," European Physical Journal Special Topics, Vol.164, pp.13-22 (2008).
- Tatsuo Yanagita, Hiromichi Suetani, and Kazuyuki Aihara: "Bifurcation Analysis of Solitary and Synchronized Pulses and Formation of Reentrant Waves in Laterally Coupled Excitable Fibers," Physical Review E, Vol.78, 056208-1-11 (2008)
- Aiko Miyamura Ideta, Gouhei Tanaka, Takumi Takeuchi, and Kazuyuki Aihara: "A Mathematical Model of Intermittent Androgen Suppression for Prostate Cancer," Journal of Nonlinear Science, Vol.18, pp.593-641 (2008).
- Munehisa Sekikawa, Takashi Kohno, and Kazuyuki Aihara: "An Integrated Circuit Design of a Silicon Neuron and its Measurement Results," Artificial Life and Robotics, Vol.13, No.1, pp.116-119 (2008).
- Makito Oku and Kazuyuki Aihara: "Networked Reinforcement Learning," Artificial Life and Robotics, Vol.13, No.1, pp.112-115 (2008).
- Xing-Ming Zhao, Luonan Chen, and Kazuyuki Aihara: "[[Protein Function Prediction with the Shortest Path in Functional Linkage Graph and Applications, Vol.4, pp.375-384 (2008). Boosting>http://inderscience.metapress.com/content/585vm3m11068171t/]]," International Journal of Bioinformatics Research and
- Qian Guo, Youshan Tao, Kazuyuki Aihara: "Mathematical Modelling of Prostate Tumor Growth under Intermittent Androgen Suppression with Partial Differential Equations," International Journal of Bifurcation and Chaos, Vol.18, No.12, pp.3789-3797 (2008).
- Natsuhiro Ichinose, Tetsushi Yada, Osamu Gotoh and Kazuyuki Aihara: "Reconstruction of Transcription-translation Dynamics with a Model of Gene Networks," Journal of Theoretical Biology, Vol.255, No.4, pp.378-386 (2008).
- D.P. Mandic, S. Javidi, S.L. Goh, A. Kuh, K. Aihara: "Complex-valued Prediction of Wind Profile using Augmented Complex Statistics ," Renewable Energy, Vol.34, No.1, pp.196-201 (2009).
- Hong Fan, Zhijie Wang, Luonan Chen, Kazuyuki Aihara: "Feedback Mechanism in Network Dynamics with Preferential Flow," Physical Review E, Vol.79, 026107 (2009).
- Masashi Aono, Yoshito Hirata, Masahiko Hara, and Kazuyuki Aihara: "Amoeba-based Chaotic Neurocomputing: Combinatorial Optimization by Coupled Biological Oscillators," New Generation Computing, Vol.27, No.2, pp.129-157 (2009).
- Yuta Kakimoto and Kazuyuki Aihara: "Hierarchical Spatio-Temporal Dynamics of a Chaotic Neural Network for Multistable Binocular Rivalry," New Mathematics and Natural Computation, Vol.5, No.1, pp.123-134 (2009).
- Kantaro Fujiwara and Kazuyuki Aihara: "Trial-to-trial Variability and its Influence on Higher Order Statistics," Journal of Artificial Life and Robotics, Vol.13, No.2, pp.470-473 (2009).
- Kantaro Fujiwara and Kazuyuki Aihara: "Time-varying Irregularities in Multiple Trial Spike Data," European Physical Journal B, Vol.68, No.2, pp.283-289 (2009).
- Xing-Ming Zhao, Rui-Sheng Wang, Luonan Chen, Kazuyuki Aihara: "Automatic Modeling of Signaling Pathways by Network Flow Model," Journal of Bioinformatics and Computational Biology, Vol.7, No.2, pp.309-322 (2009).
- Bing Wang, Yuexing Han, Luonan Chen, Kazuyuki Aihara: "Limited Ability Driven Phase Transitions in the Coevolution Process in Axelrod's Model," Physics Letters A, Vol.373, pp.1519-1523 (2009).
- Evan Monroig, Kazuyuki Aihara, and Yozo Fujino: "Modeling Dynamics from only Output Data," Physical Review E, Vol.79, 056208 (2009).
- Daisuke Atuti, Takashi Morie, and Kazuyuki Aihara: "A Current-Sampling-Mode CMOS Arbitrary Chaos Generator Circuit Using Pulse Modulation Approach," IEICE Transactions on Fundamentals of Electronics Communications and Computer Sciences, Vol.E92A, No.5, pp.1308-1315 (2009).
- Koh Hashimoto and Kazuyuki Aihara: "Fixation Probabilities in Evolutionary Game Dynamics with a Two-strategy Game in Finite Diploid Populations," Journal of Theoretical Biology, Vol.258, pp.637-645 (2009).
- Hideki Tanaka, Takashi Morie, and Kazuyuki Aihara: "A CMOS Spiking Neural Network Circuit with Symmetric/Asymmetric STDP Function," IEICE Transactions on Fundamentals of Electronics, Communications and Computer Sciences, Vol.E92-A, No.7, pp.1690-1698 (2009).
- Isao Nishikawa, Naofumi Tsukamoto, Kazuyuki Aihara: "Switching Phenomenon Induced by Breakdown of Chaotic Phase Synchronization," Physica D, Vol.238, pp.1197-1202 (2009).
- Gouhei Tanaka, Shigeki Tsuji, and Kazuyuki Aihara: "Grazing-induced Crises in Hybrid Dynamical Systems," Physics Letters A, Vol.373, pp.3134-3139 (2009).
- Gouhei Tanaka and Kazuyuki Aihara: "Complex-Valued Multistate Associative Memory With Nonlinear Multilevel Functions for Gray-Level Image Reconstruction," IEEE Transactions on Neural Networks, Vol.20, No.9, pp.1463-1473 (2009).
- Shigeru Kubota, Kosuke Hamaguchi, and Kazuyuki Aihara: "Local Excitation Solutions in One-dimensional Neural Fields by External Input Stimuli," Neural Computing \& Applications, Vol.18, No.6, pp.591-602 (2009).
- Bing Wang, Kazuyuki Aihara, Beom Jun Kim: "Comparison of Immunization Strategies in Geographical Networks," Physics Letters A, Vol.373, pp.3877-3882 (2009).
- Hajime Mushiake, Kazuhiro Sakamoto, Naohiro Saito, Toshiro Inui, Kazuyuki Aihara, and Jun Tanji: "Involvement of the Prefrontal Cortex in Problem Solving," International Review of Neurobiology, Vol.85, pp.1-11 (2009).
- Yasushi Miyagi, Tsuyoshi Okamoto, Takato Morioka, Shozo Tobimatsu, Yoshitaka Nakanishi, Kazuyuki Aihara, Kimiaki Hashiguchi, Nobuya Murakami, Fumiaki Yoshida, Kazuhiro Samura, Shinji Nagata, and Tomio Sasaki: "Spectral Analysis of Field Potential Recordings by Deep Brain Stimulation Electrode for Localization of Subthalamic Nucleus in Patients with Parkinson's Disease," Stereotact Funct Neurosurg, Vol.87, No.4, pp.211-218 (2009).
- Hironori Asai, Shunsuke Iwamori, Kentaro Kawai, Shigeki Ehira, Jun-ichi Ishihara, Kazuyuki Aihara, Shuichi Shoji, Hideo Iwasaki: "Cyanobacterial Cell Lineage Analysis of the Spatiotemporal hetR Expression Profile during Heterocyst Pattern Formation in Anabaena sp. PCC 7120," PLoS One, Vol.4, No.10, e7371 (2009).
- Yoshito Hirata and Kazuyuki Aihara: "Representing Spike Trains using Constant Sampling Intervals," Journal of Neuroscience Methods, Vol.183, No.2, pp.277-286 (2009).
- Yoshito Hirata and Kazuyuki Aihara: "Indentifying Hidden Common Causes from Bivariate Time Series: A Method using Recurrence Plots," Physical Review E, Vol.81, No.1, 016203-1-7 (2010).
- Yoshito Hirata, Masashi Aono, Masahiko Hara, and Kazuyuki Aihara: "Spontaneous Mode Switching in Coupled Oscillators Competing for Constant Amounts of Resources," Chaos, Vol.20, 013117 (2010).
- Youshan Tao, Qian Guo and Kazuyuki Aihara: "A Mathematical Model of Prostate Tumor Growth Under Hormone Therapy with Mutation Inhibitor," Journal of Nonlinear Science, Vol.20, No.2, pp.131-275 (2010).
- Xing-Ming Zhao, Luonan Chen, and Kazuyuki Aihara: "A Discriminative Approach for Identifying Domain-domain Interactions from Protein-protein Interactions," Proteins, Vol.78, No.5, pp.1243-1253 (2010).
- Yoshito Hirata, Nicholas Bruchovsky, and Kazuyuki Aihara: "Development of a Mathematical Model that Predicts the Outcome of Hormone Therapy for Prostate Cancer," Journal of Theoretical Biology, Vol.264, pp.517-527 (2010).
- Takashi Kanamaru and Kazuyuki Aihara: "Roles of Inhibitory Neurons in Rewiring-Induced Synchronization in Pulse-Coupled Neural Networks," Neural Computation, Vol.22, No.5, pp.1383-1398 (2010).
- Masashi Aono, Masahiko Hara, Kazuyuki Aihara, and Toshinori Munakata: "Amoeba-Based Emergent Computing: Combinatorial Optimization and Autonomous Meta-Problem Solving," International Journal of Unconventional Computing, Vol.6, pp.89-108 (2010).
- Toshinori Munakata, Jun Takahashi, Munehisa Sekikawa, and Kazuyuki Aihara: "Chaos Computing: A Unified View," International Journal of Parallel, Emergent and Distributed Systems, Vol.25, No.1, pp.3-16 (2010).
- Yuichi Katori, Eric J. Lang, Miho Onizuka, Mitsuo Kawato, and Kazuyuuki Aihara: "Quantitative Modeling of Spatio-temporal Dynamics of Inferior Olive Neurons with a Simple Conductance-based Model," International Journal of Bifurcation and Chaos, Vol.20, No.3, pp.583-603 (2010).
- Yoshito Hirata, Nicholas Bruchovsky, and Kazuyuki Aihara:"Development of a Mathematical Model that Predicts the Outcome of Hormone Therapy for Prostate Cancer," Journal of Theoretical Biology, Vol.264, pp.517-527 (2010).
- Masashi Aono, Yoshito Hirata, Masahiko Hara, and Kazuyuki Aihara: "A Model of Amoeba-based Neurocomputer," Journal of Computer Chemistry, Japan, Vol.9, No.3, pp.143-156 (2010).
- Yoshito Hirata and Kazuyuki Aihara: "Devaney's Chaos on Recurrence Plots," Physical Review E, Vol.82, No.3, 036209-1-6 (2010).
- Gouhei Tanaka, Yusuke Okada, and Kazuyuki Aihara: "Phase Transitions in Mixed Populations Composed of Two Types of Self-oscillatory Elements with Different Periods," Physical Review E, Vol.82, No.3, 035202(R) (2010).
- Nathan W. Gouwens, Hugo Zeberg, Kunichika Tsumoto, Takashi Tateno, Kazuyuki Aihara, and Hugh P.C. Robinson: "Synchronization of Firing in Cortical Fast-Spiking Interneurons at Gamma Frequencies: A Phase-Resetting Analysis," PLoS Computational Biology, Vol.6, No.9, e1000951 (2010).
- Isao T. Tokuda, Cheol E. Han, Kazuyuki Aihara, Mitsuo Kawato, Nicolas Schweighofer: "The Role of Chaotic Resonance in Cerebellar Learning," Neural Networks, Vol.23, No.7, pp.836-842 (2010).
- Makito Oku and Kazuyuki Aihara: "Dynamical Inter-region Coupling in the Brain: A Meso-scopic Model from a Dynamical Systems Viewpoint," Nonlinear Theory and Its Applications, IEICE, Vol.1, No.1, pp.79-88 (2010).
- Satoshi Suzuki, Yoshito Hirata, and Kazuyuki Aihara: "Definition of Distance for Marked Point Process Data and its Application to Recurrence Plot-based Analysis of Exchange Tick Data of Foreign Currencies," International Journal of Bifurcation and Chaos, Vol.20, No.11, pp.3699-3708 (2010).
- Kazuyuki Aihara and Hideyuki Suzuki: "Theory of Hybrid Dynamical Systems and its Applications to Biological and Medical Systems," Philosophical Transactions of Royal Society A, Vol.368, No.1930, pp.4893-4914 (2010).
- Gouhei Tanaka, Yoshito Hirata, Larry Goldenberg, Nicholas Bruchovsky, and Kazuyuki Aihara: "Mathematical Modelling of Prostate Cancer Growth and its Application to Hormone Therapy," Philosophical Transactions of Royal Society A, Vol.368, No.1930, pp.5029-5044 (2010).
- Taiji Suzuki, Nicholas Bruchovsky, and Kazuyuki Aihara: "Piecewise Affine Systems Modelling for Optimizing Hormone Therapy of Prostate Cancer," Philosophical Transactions of Royal Society A, Vol.368, No.1930, pp.5045-5059 (2010).
- Makito Oku and Kazuyuki Aihara: "Noise-robust Realization of Turing-complete Cellular Automata by using Neural Networks with Pattern Representation," Physics Letters A, Vol.374, pp.4859-4863 (2010).
- Terumi Nakai, Yoshito Hirata, Shunsuke Horai, Michio Akagi, and Kazuyuki Aihara: "Firm Evidence of Chaos for Heartbeats in Dogs under Constant Flow Ventilation," Internationl Journal of Bifurcation and Chaos, Vol.20, No.12, pp.4151-4158 (2010).
- Masanori Shiro, Yoshito Hirata, and Kazuyuki Aihara: "Failure of Pseudo-periodic Surrogates," Artificial Life and Robotics, Vol.15, No.4, pp.496-499 (2010).
- Yoshito Hirata, Mario di Bernardo, Nicholas Bruchovsky, and Kazuyuki Aihara:"Hybrid Optimal Scheduling for Intermittent Androgen Suppression of Prostate Cancer," Chaos, Vol.20, No.4, 045125 (2010).

Last-modified: 2017-06-05 (月) 15:22:38 (527d)